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Report for CCDS19084.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19084.1 Public Mus musculus 5 Abcb1a 23 108 98 CCDS HistoryNCBI Gene:18671Re-query CCDS DB by CCDS ID:19084.1Re-query CCDS DB by GeneID:18671See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19084.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047753.4 ENSMUSP00000041204.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047753.4Link to Ensembl Protein Viewer:ENSMUSP00000041204.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000047753Re-query CCDS DB by Protein ID:ENSMUSP00000041204
Original member Current member NCBI NM_011076.3 NP_035206.2 Accepted alive Link to Nucleotide Sequence:NM_011076.3Link to Protein Sequence:NP_035206.2Re-query CCDS DB by Nucleotide ID:NM_011076Re-query CCDS DB by Protein ID:NP_035206Link to BLAST:NP_035206.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035206.2 1276 P21447 1276 100% 0 0

Chromosomal Locations for CCDS 19084.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 8660668 8660732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8664546 8664594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8674683 8674842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8683384 8683435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8685221 8685412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8686127 8686298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8694066 8694190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8698486 8698657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8701609 8701722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8701867 8701977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8702153 8702278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8702369 8702572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8702793 8702963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8713187 8713348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8714887 8715063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8715742 8715888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8718979 8719086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8719991 8720068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8723159 8723242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8726773 8726976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8732292 8732392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8733599 8733739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8737615 8737771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8738695 8738892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8740409 8740615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8746509 8746655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8747355 8747561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3831 nt):
ATGGAACTTGAAGAGGACCTTAAGGGAAGAGCAGACAAGAACTTCTCAAAGATGGGCAAAAAGAGTAAAA
AGGAGAAGAAAGAAAAGAAACCAGCAGTCAGTGTGCTTACAATGTTTCGTTATGCAGGTTGGCTGGACAG
GTTGTACATGCTGGTGGGAACTCTGGCTGCTATTATCCATGGAGTGGCGCTCCCACTTATGATGCTGATC
TTTGGTGACATGACAGATAGCTTTGCAAGTGTAGGAAACGTCTCTAAAAACAGTACTAATATGAGTGAGG
CCGATAAAAGAGCCATGTTTGCCAAACTGGAGGAAGAAATGACCACGTACGCCTACTATTACACCGGGAT
TGGTGCTGGTGTGCTCATAGTTGCCTACATCCAGGTTTCATTTTGGTGCCTGGCAGCTGGAAGACAGATA
CACAAGATCAGGCAGAAGTTTTTTCATGCTATAATGAATCAGGAGATAGGCTGGTTTGATGTGCATGACG
TTGGGGAGCTCAACACCCGGCTCACAGATGATGTTTCCAAAATTAATGAAGGAATTGGTGACAAAATCGG
AATGTTCTTCCAGGCAATGGCAACATTTTTTGGTGGTTTTATAATAGGATTTACCCGTGGCTGGAAGCTA
ACCCTTGTGATTTTGGCCATCAGCCCTGTTCTTGGACTGTCAGCTGGTATTTGGGCAAAGATATTGTCTT
CATTTACTGATAAGGAACTCCATGCTTATGCAAAAGCTGGAGCAGTTGCTGAAGAAGTCTTAGCAGCCAT
CAGAACTGTGATTGCGTTTGGAGGACAAAAGAAGGAACTTGAAAGGTACAATAACAACTTGGAAGAAGCT
AAAAGGCTGGGGATAAAGAAAGCTATCACGGCCAACATCTCCATGGGTGCAGCTTTTCTCCTTATCTATG
CATCATATGCTCTGGCATTCTGGTATGGGACTTCCTTGGTCATCTCCAAAGAATACTCTATTGGACAAGT
GCTCACTGTCTTCTTTTCCGTGTTAATTGGAGCATTCAGTGTTGGACAGGCATCTCCAAATATTGAAGCC
TTCGCCAATGCACGAGGAGCAGCTTATGAAGTCTTCAAAATAATTGATAATAAGCCCAGTATAGACAGCT
TCTCAAAGAGTGGGCACAAACCAGACAACATACAAGGAAATCTGGAATTTAAGAATATTCACTTCAGTTA
CCCATCTCGAAAAGAAGTTCAGATCTTGAAGGGCCTCAATCTGAAGGTGAAGAGCGGACAGACGGTGGCC
CTGGTTGGCAACAGTGGCTGTGGAAAAAGCACAACTGTCCAGCTGATGCAAAGGCTCTACGACCCCCTAG
ATGGCATGGTCAGTATCGACGGACAGGACATCAGAACCATCAATGTGAGGTATCTGAGGGAGATCATTGG
TGTGGTGAGTCAGGAACCTGTGCTGTTTGCCACCACGATCGCCGAGAACATTCGCTATGGCCGAGAAGAT
GTCACCATGGATGAGATTGAGAAAGCTGTCAAGGAAGCCAATGCCTATGACTTCATCATGAAACTGCCCC
ACCAATTTGACACCCTGGTTGGTGAGAGAGGGGCGCAGCTGAGTGGGGGACAGAAACAGAGAATCGCCAT
TGCCCGGGCCCTGGTCCGCAATCCCAAGATCCTTTTGTTGGACGAGGCCACCTCAGCCCTGGATACAGAA
AGTGAAGCTGTGGTTCAGGCCGCACTGGATAAGGCTAGAGAAGGCCGGACCACCATTGTGATAGCTCATC
GCTTGTCTACCGTTCGTAATGCTGACGTCATTGCTGGTTTTGATGGTGGTGTCATTGTGGAGCAAGGAAA
TCATGATGAGCTCATGAGAGAAAAGGGCATTTACTTCAAACTTGTCATGACACAGACAGCAGGAAATGAA
ATTGAATTAGGAAATGAAGCTTGTAAATCTAAGGATGAAATTGATAATTTAGACATGTCTTCAAAAGATT
CAGGATCCAGTCTAATAAGAAGAAGATCAACTCGCAAAAGCATCTGTGGACCACATGACCAAGACAGGAA
GCTTAGTACCAAAGAGGCCCTGGATGAAGATGTACCTCCAGCTTCCTTTTGGCGGATCCTGAAGTTGAAT
TCAACTGAATGGCCTTATTTTGTGGTTGGTATATTCTGTGCCATAATAAATGGAGGCTTACAGCCAGCAT
TCTCCGTAATATTTTCAAAAGTTGTAGGGGTTTTTACAAATGGTGGCCCCCCTGAAACCCAGCGGCAGAA
CAGCAACTTGTTTTCCTTGTTGTTTCTGATCCTTGGGATCATTTCTTTCATTACATTTTTTCTTCAGGGC
TTCACATTTGGCAAAGCTGGAGAGATCCTCACCAAGCGACTCCGATACATGGTTTTCAAATCCATGCTGA
GACAGGATGTGAGCTGGTTTGATGACCCTAAAAACACCACCGGAGCACTGACCACCAGGCTCGCCAACGA
TGCTGCTCAAGTGAAAGGGGCTACAGGGTCTAGGCTTGCTGTGATTTTCCAGAACATAGCAAATCTTGGG
ACAGGAATCATCATATCCCTAATCTATGGCTGGCAACTAACACTTTTACTCTTAGCAATTGTACCCATCA
TTGCGATAGCAGGAGTGGTTGAAATGAAAATGTTGTCTGGACAAGCACTGAAAGATAAGAAGGAACTAGA
AGGTTCTGGAAAGATTGCTACGGAAGCAATTGAAAACTTCCGCACTGTTGTCTCTTTGACTCGGGAGCAG
AAGTTTGAAACCATGTATGCCCAGAGCTTGCAGATACCATACAGAAATGCGATGAAGAAAGCACACGTGT
TTGGGATCACGTTCTCCTTCACCCAGGCCATGATGTATTTTTCTTATGCTGCTTGTTTCCGGTTCGGTGC
CTACTTGGTGACACAACAACTCATGACTTTTGAAAATGTTCTGTTAGTATTCTCAGCTATTGTCTTTGGT
GCCATGGCAGTGGGGCAGGTCAGTTCATTCGCTCCTGACTATGCGAAAGCCACAGTGTCAGCATCCCACA
TCATCAGGATCATTGAGAAAACCCCCGAGATTGACAGCTACAGCACGCAAGGCCTAAAGCCGAATATGTT
GGAAGGAAATGTGCAATTTAGTGGAGTCGTGTTCAACTATCCCACCCGACCCAGCATCCCAGTGCTTCAG
GGGCTGAGCCTTGAGGTGAAGAAGGGCCAGACGCTGGCCCTGGTGGGCAGCAGTGGCTGCGGGAAGAGCA
CAGTGGTCCAGCTGCTCGAGCGCTTCTACGACCCCATGGCTGGATCAGTGTTTCTAGATGGCAAAGAAAT
AAAGCAACTGAATGTCCAGTGGCTCCGAGCACAGCTGGGCATTGTGTCCCAAGAGCCCATTCTCTTTGAC
TGCAGCATCGCAGAGAACATTGCCTACGGAGACAACAGCCGGGTCGTGTCTTATGAGGAGATTGTGAGGG
CAGCCAAGGAGGCCAACATCCACCAGTTCATCGACTCGCTACCTGATAAATACAACACCAGAGTAGGAGA
CAAAGGCACTCAGCTGTCGGGTGGGCAGAAGCAGCGCATCGCCATCGCACGCGCCCTCGTCAGACAGCCT
CACATTTTACTTCTGGACGAAGCAACATCAGCTCTGGATACAGAAAGTGAAAAGGTTGTCCAGGAAGCGC
TGGACAAAGCCAGGGAAGGCCGCACCTGCATTGTGATCGCTCACCGCCTGTCCACCATCCAGAACGCGGA
CTTGATCGTGGTGATTCAGAACGGCAAGGTCAAGGAGCACGGCACCCACCAGCAGCTGCTGGCGCAGAAG
GGCATCTACTTCTCAATGGTCAGTGTGCAGGCTGGAGCAAAGCGCTCATGA

Translation (1276 aa):
MELEEDLKGRADKNFSKMGKKSKKEKKEKKPAVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLI
FGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQI
HKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKL
TLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEA
KRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEA
FANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVA
LVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGRED
VTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTE
SEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTAGNE
IELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKLSTKEALDEDVPPASFWRILKLN
STEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQG
FTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLG
TGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQ
KFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAACFRFGAYLVTQQLMTFENVLLVFSAIVFG
AMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQ
GLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFD
CSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQP
HILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQK
GIYFSMVSVQAGAKRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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