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Report for CCDS19056.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19056.1 Public Mus musculus 4 Tnfrsf18 23 108 98 CCDS HistoryNCBI Gene:21936Re-query CCDS DB by CCDS ID:19056.1Re-query CCDS DB by GeneID:21936See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19056.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103173.9 ENSMUSP00000099462.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103173.9Link to Ensembl Protein Viewer:ENSMUSP00000099462.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000103173Re-query CCDS DB by Protein ID:ENSMUSP00000099462
Original member Current member NCBI NM_009400.3 NP_033426.1 Accepted alive Link to Nucleotide Sequence:NM_009400.3Link to Protein Sequence:NP_033426.1Re-query CCDS DB by Nucleotide ID:NM_009400Re-query CCDS DB by Protein ID:NP_033426Link to BLAST:NP_033426.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033426.1 228 O35714-1 228 100% 0 0

Chromosomal Locations for CCDS 19056.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 156026387 156026537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156027316 156027438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156027962 156028049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156028221 156028423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156028495 156028616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (687 nt):
ATGGGGGCATGGGCCATGCTGTATGGAGTCTCGATGCTCTGTGTGCTGGACCTAGGTCAGCCGAGTGTAG
TTGAGGAGCCTGGCTGTGGCCCTGGCAAGGTTCAGAACGGAAGTGGCAACAACACTCGCTGCTGCAGCCT
GTATGCTCCAGGCAAGGAGGACTGTCCAAAAGAAAGGTGCATATGTGTCACACCTGAGTACCACTGTGGA
GACCCTCAGTGCAAGATCTGCAAGCACTACCCCTGCCAACCAGGCCAGAGGGTGGAGTCTCAAGGGGATA
TTGTGTTTGGCTTCCGGTGTGTTGCCTGTGCCATGGGCACCTTCTCCGCAGGTCGTGACGGTCACTGCAG
ACTTTGGACCAACTGTTCTCAGTTTGGATTTCTCACCATGTTCCCTGGGAACAAGACCCACAATGCTGTG
TGCATCCCGGAGCCACTGCCCACTGAGCAATACGGCCATTTGACTGTCATCTTCCTGGTCATGGCTGCAT
GCATTTTCTTCCTAACCACAGTCCAGCTCGGCCTGCACATATGGCAGCTGAGGAGGCAACACATGTGTCC
TCGAGAGACCCAGCCATTCGCGGAGGTGCAGTTGTCAGCTGAGGATGCTTGCAGCTTCCAGTTCCCTGAG
GAGGAACGCGGGGAGCAGACAGAAGAAAAGTGTCATCTGGGGGGTCGGTGGCCATGA

Translation (228 aa):
MGAWAMLYGVSMLCVLDLGQPSVVEEPGCGPGKVQNGSGNNTRCCSLYAPGKEDCPKERCICVTPEYHCG
DPQCKICKHYPCQPGQRVESQGDIVFGFRCVACAMGTFSAGRDGHCRLWTNCSQFGFLTMFPGNKTHNAV
CIPEPLPTEQYGHLTVIFLVMAACIFFLTTVQLGLHIWQLRRQHMCPRETQPFAEVQLSAEDACSFQFPE
EERGEQTEEKCHLGGRWP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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