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Report for CCDS19043.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19043.1 Public Mus musculus 4 Aurkaip1 23 108 98 CCDS HistoryNCBI Gene:66077Re-query CCDS DB by CCDS ID:19043.1Re-query CCDS DB by GeneID:66077See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19043.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084097.11 ENSMUSP00000081114.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084097.11Link to Ensembl Protein Viewer:ENSMUSP00000081114.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000084097Re-query CCDS DB by Protein ID:ENSMUSP00000081114
Original member Current member EBI ENSMUST00000105591.1 ENSMUSP00000101216.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105591.1Link to Ensembl Protein Viewer:ENSMUSP00000101216.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105591Re-query CCDS DB by Protein ID:ENSMUSP00000101216
Original member Current member EBI ENSMUST00000105592.7 ENSMUSP00000101217.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105592.7Link to Ensembl Protein Viewer:ENSMUSP00000101217.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105592Re-query CCDS DB by Protein ID:ENSMUSP00000101217
Original member Current member NCBI NM_025338.4 NP_079614.1 Accepted alive Link to Nucleotide Sequence:NM_025338.4Link to Protein Sequence:NP_079614.1Re-query CCDS DB by Nucleotide ID:NM_025338Re-query CCDS DB by Protein ID:NP_079614Link to BLAST:NP_079614.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079614.1 200 Q9DCJ7 200 100% 0 0

Chromosomal Locations for CCDS 19043.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 155832016 155832070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155832352 155832797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155832891 155832992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (603 nt):
ATGTTCCTGGCGCGCCTGACTTCACGGCTGGCCAGGACTGTTGTTCCCTGGGCAGGTTTCAGTCGTTCCT
GCCCTGGCTCCGGGGTGATTGGCAGCTATGCTTTTCGACCCCTTTACAGTTTGCAGCCTGCAAGCCCAAG
TCGGGCTGCCTCCCTCCCTGGTAAGAGGACCCAGTCAGAGCTTGAGGAGTTCCTGGTCCCCAGGAAGATG
GCCATCAGTCCTCTAGAGAGCTGGCTGACTGCTCAATACTTATTGCCCAGACGGAATGTCGAGGTCCCAG
TGACTCTGGCTCCCTCCCAGTTCTACGAATGTCCACCTAGGCAGGGGGAGGAGGAAGCCCAGCAGGGAGT
CAGGGAAGCCTGGGATGCCACTCCAGTGCAGTGCAAAAACGTGCTGAAGATCCGAAGGCGAAAGATGAAC
CACCACAAGTACCGTAAACTGGTCAAAAGGACCCGGTTTCTACGTCGCAAGGTCCGGGAAGGACGTTTGA
AGAAGAAGCAGATCAAATTTGAGAAAGACTTGAAGCGCATCTGGCTTAAGGCAGGCCTGAAGGAAGCCCC
TGAGAACTGGCAGACCCCGAAGATCTACCTGAAGAACAAATAA

Translation (200 aa):
MFLARLTSRLARTVVPWAGFSRSCPGSGVIGSYAFRPLYSLQPASPSRAASLPGKRTQSELEEFLVPRKM
AISPLESWLTAQYLLPRRNVEVPVTLAPSQFYECPPRQGEEEAQQGVREAWDATPVQCKNVLKIRRRKMN
HHKYRKLVKRTRFLRRKVREGRLKKKQIKFEKDLKRIWLKAGLKEAPENWQTPKIYLKNK


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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