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Report for CCDS18996.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18996.1 Public Mus musculus 4 Gpr153 23 108 98 CCDS HistoryNCBI Gene:100129Re-query CCDS DB by CCDS ID:18996.1Re-query CCDS DB by GeneID:100129See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18996.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055754.7 ENSMUSP00000052742.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055754.7Link to Ensembl Protein Viewer:ENSMUSP00000052742.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000055754Re-query CCDS DB by Protein ID:ENSMUSP00000052742
Original member Current member EBI ENSMUST00000105651.7 ENSMUSP00000101276.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105651.7Link to Ensembl Protein Viewer:ENSMUSP00000101276.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105651Re-query CCDS DB by Protein ID:ENSMUSP00000101276
Original member Current member NCBI NM_178406.2 NP_848493.1 Accepted alive Link to Nucleotide Sequence:NM_178406.2Link to Protein Sequence:NP_848493.1Re-query CCDS DB by Nucleotide ID:NM_178406Re-query CCDS DB by Protein ID:NP_848493Link to BLAST:NP_848493.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848493.1 631 Q8K0Z9 631 100% 0 0

Chromosomal Locations for CCDS 18996.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 152279125 152279480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152279845 152280274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152281766 152281958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152282371 152282555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152282858 152283589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1896 nt):
ATGAGTGATGAGCGGAGGCTGCCCAGCAGTGCGGTAGGTTGGCTAGCATGCGGAGGTCTGTCGCTGCTAG
CCAACGCCTGGGGCATCCTCAGTGTGGGTGCCAAGCAGAAGAAGTGGAAGCCGCTGGAGTTCTTGCTTTG
CACGCTGGCAGCCACCCACATGCTCAATGTGGCGGTACCCATCGCCACATATGCTGTGGTGCAGCTGCGG
AGGCAACGTCCCGACTACGAGTGGAACGAGGGCCTCTGTAAGGTCTTCGTGTCGACATTCTACACCCTCA
CACTGGCCACCTGCTTCTCTGTCACCTCCATCTCCTACCACCGCATGTGGATGGTCCGATGGCCAGTCAA
CTACCGGCTGAGCAACGCCAAGAAGCAGGCGGTGCACACAGTTATGGGCATCTGGATGGTGTCCTTCATC
CTGTCGGCCCTTCCTGCCGTTGGCTGGCACGACACGAGCGAGCGTTTCTACACCCACGGCTGCCGCTTCA
TCGTGGCCGAGATTGGCCTGGGCTTCGGCGTCTGCTTCTTGCTGCTGGTGGGAGGCAGCGTGGCCATGGG
CATGGTCTGCACAGCCATTGCCCTCTTCCAGACACTGGCCACGCAGGTGGGGCACCGGGCTGACCGCCGC
ACCTTCACCGTGCCCACCATCGTGGTGGAAGACGCACAGGGCAAGCGTCGCTCCTCCATTGATGGCTCAG
AGCCTGCCAGAACTTCGCTACAGATCACGGGCCTTGTGGCCACCATTGTGGTCATCTATGACTGCCTCAT
GGGTTTCCCTGTGCTGGTGGTGAGCTTCAGTAGTCTGCGGGCAGATGCTTCAGCACCCTGGATGGCGCTC
TGTGTCCTGTGGTGCTCCGTGACCCAGGCCCTGCTGCTGCCTCTGTTCCTCTGGACTTGTGATCGTTACC
GGGCGGATCTCAAGGCAGTCTGGGAGAAGTGTGTGGCCCTTATGGCCAACGACGAAGATTCTGACAATGA
GACCAGTCTAGAGGGCAGCATCTCCCCCGACATGGTATTGGAGCGCTCTCTTGACTATAGCTATGGAGGT
GACTTCGTGGCTCTGGACAGGATGGCCAAGTATGAACTCTCTGCCCTGGAAGGAGGCTTACCACAGCTCT
ACCCTCTGCGGCCACTGCAGGAGGATCGGATGCAGTATCTGCAGGGCGCGGGGAGGCATCGGTGCGGGTT
TCCAGGAGGGCAGCCCTGTTTCAGCCCGGCCGGGTGCTCGCAGGTCCCGCCCACCCGGCGGTTCTCCCAC
GATGATGCCGACGTGTGGGCAGCCGTCCCGCTGCCCACCTTCCTGCCACGCTGGAGCTCGGGCGAGGACT
TGGCAGCTCTGGCACACTTAATGCTGCCCGCGGGCTCCGACCGGCGGCGCGGGAGCCTGCTGGCCTTCGC
CGAGGATGCGCCCCCGTTCCGCCCGCGCCGTCGCTCTGCCGAGAGCCTGTTGTCCCTGCAGCCCTCGTCC
CTAGACGGCGGCCCGCGTCACGCGCAGGACTCGCCTCCCGGCAGCCCGCGTCGCCGCCCCGGGCCTGGCG
CCCGCTCCGCCTCGGTCTCGCTACTGCCCGACGCCTTCGCGCTGACCGCCTTCGAGCGCGAGCCGCAGGC
TCTGCGTCGCGTGCCCGCCCCAGCACAACCCTTCCCCGCTGCCCGGGACAGCGCGGAGCCTGCTGAGGTC
CCAACGCCCCCTGGTGGCCGTACGCAACGCAGCCAGGGACGCCGGGCCGCGCGCACGCACGTGGGGCCCC
TGCAGAGCAGCCTGAGCGCATCTTGGGGCGAGCCAGGCGGCTTGCACGCGGCGGGCTGCGGCAGCATTAG
CAGCTTTCTGAGCTCGCCCTCCGAGTCCTCGGGCTACGTCACGCTGCACTCGGACTCGCTGGGCTCTGCG
TCCTAG

Translation (631 aa):
MSDERRLPSSAVGWLACGGLSLLANAWGILSVGAKQKKWKPLEFLLCTLAATHMLNVAVPIATYAVVQLR
RQRPDYEWNEGLCKVFVSTFYTLTLATCFSVTSISYHRMWMVRWPVNYRLSNAKKQAVHTVMGIWMVSFI
LSALPAVGWHDTSERFYTHGCRFIVAEIGLGFGVCFLLLVGGSVAMGMVCTAIALFQTLATQVGHRADRR
TFTVPTIVVEDAQGKRRSSIDGSEPARTSLQITGLVATIVVIYDCLMGFPVLVVSFSSLRADASAPWMAL
CVLWCSVTQALLLPLFLWTCDRYRADLKAVWEKCVALMANDEDSDNETSLEGSISPDMVLERSLDYSYGG
DFVALDRMAKYELSALEGGLPQLYPLRPLQEDRMQYLQGAGRHRCGFPGGQPCFSPAGCSQVPPTRRFSH
DDADVWAAVPLPTFLPRWSSGEDLAALAHLMLPAGSDRRRGSLLAFAEDAPPFRPRRRSAESLLSLQPSS
LDGGPRHAQDSPPGSPRRRPGPGARSASVSLLPDAFALTAFEREPQALRRVPAPAQPFPAARDSAEPAEV
PTPPGGRTQRSQGRRAARTHVGPLQSSLSASWGEPGGLHAAGCGSISSFLSSPSESSGYVTLHSDSLGSA
S


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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