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Report for CCDS18862.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18862.1 Public Mus musculus 4 Necap2 23 108 98 CCDS HistoryNCBI Gene:66147Re-query CCDS DB by CCDS ID:18862.1Re-query CCDS DB by GeneID:66147See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18862.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030760.14 ENSMUSP00000030760.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030760.14Link to Ensembl Protein Viewer:ENSMUSP00000030760.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000030760Re-query CCDS DB by Protein ID:ENSMUSP00000030760
Original member Current member NCBI NM_025383.4 NP_079659.1 Accepted alive Link to Nucleotide Sequence:NM_025383.4Link to Protein Sequence:NP_079659.1Re-query CCDS DB by Nucleotide ID:NM_025383Re-query CCDS DB by Protein ID:NP_079659Link to BLAST:NP_079659.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079659.1 266 Q9D1J1 266 100% 0 0

Chromosomal Locations for CCDS 18862.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 141067564 141067612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141068195 141068279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141070056 141070233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141072529 141072637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141073508 141073589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141073675 141073779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141074960 141075060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141078213 141078304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (801 nt):
ATGGAGGAGAGTGAGTACGAGTCTGTTCTGTGTGTCAAGCCGGAGGTCCACGTCTACCGCATCCCGCCGC
GGGCCACCAACCGTGGTTACAGGGCCTCAGAATGGCAACTGGACCAGCCATCGTGGAGTGGCCGGCTGCG
GATCACTGCGAAAGGGAAGGTGGCCTACATCAAGCTGGAGGACAGGACCTCTGGGGAGCTCTTCGCACAG
GCCCCCGTGGACCAGTTTCCCGGCACCGCAGTGGAGAGTGTGACAGACTCCAGCAGGTACTTCGTCATCC
GAATTGAAGATGGAAATGGGCGACGTGCTTTTATTGGGCTTGGCTTTGGAGACCGAGGGGACGCCTTTGA
CTTCAACGTGGCATTACAGGACCATTTCAAGTGGGTGAAGCAGCAGTGTGAGTTTGCGAAACAAGCGCAG
AACCCAGATGAAGGCCCCAAGTTGGACCTGGGCTTCAAGGACGGCCAGACCATCAAGATCAACATCGCAA
ACATGAGGAAGAAGGAAGGAGCAGCTGGTACCCCAAGAGCCAGGCCCACCAGCGCAGGAGGGCTGAGCCT
GCTGCCCCCTCCTCCGGGGGGCAAGAGTTCCACTGTCATCCCTCCCTCTGGAGAGCAGCTGTCTGTGGGG
GGCTCTCTGGTTCAGCCAGCAGTTGTTTCTGGTTCAGGAGGTGCCACAGAACTCTGGCCACAATCTAAGC
CTGCTGCCGCTGCCACTGCTGATATCTGGGGAGACTTCACCAAATCCACAGGGTCCCCCTCCAGCCAGTC
TCAGCCAGGCACCGGCTGGGTCCAGTTCTGA

Translation (266 aa):
MEESEYESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGKVAYIKLEDRTSGELFAQ
APVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGLGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQ
NPDEGPKLDLGFKDGQTIKINIANMRKKEGAAGTPRARPTSAGGLSLLPPPPGGKSSTVIPPSGEQLSVG
GSLVQPAVVSGSGGATELWPQSKPAAAATADIWGDFTKSTGSPSSQSQPGTGWVQF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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