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Report for CCDS18825.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18825.1 Public Mus musculus 4 Pink1 23 108 98 CCDS HistoryNCBI Gene:68943Re-query CCDS DB by CCDS ID:18825.1Re-query CCDS DB by GeneID:68943See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18825.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030536.12 ENSMUSP00000030536.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030536.12Link to Ensembl Protein Viewer:ENSMUSP00000030536.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000030536Re-query CCDS DB by Protein ID:ENSMUSP00000030536
Original member Current member NCBI NM_026880.2 NP_081156.2 Accepted alive Link to Nucleotide Sequence:NM_026880.2Link to Protein Sequence:NP_081156.2Re-query CCDS DB by Nucleotide ID:NM_026880Re-query CCDS DB by Protein ID:NP_081156Link to BLAST:NP_081156.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081156.2 580 Q99MQ3 580 100% 0 0

Chromosomal Locations for CCDS 18825.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 138313956 138314213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 138315497 138315733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 138316004 138316131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 138317305 138317468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 138317896 138318078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 138319989 138320089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 138320738 138321022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 138325833 138326219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1743 nt):
ATGGCGGTGCGACAGGCACTGGGCCGAGGCCTGCAGCTGGGTCGGGCGCTGCTGCTGCGCTTCGCGCCCA
AGCCCGGCCCGCTGTTCGGCTGGGGGAAGCCCGGCCCCGCGGCGGCCTGGGGCCGCGGAGAGCGCCCAGG
CCAGGTCGTAAGCCCCGGAGCACAGCCTCGGCCGGTCGGGCTCCCCCTCCCGGACCGCTACCGCTTCTTC
CGCCAGTCGGTAGCTGGGCTGGCGGCGCGGATCCAGAGGCAGTTCATGGTGCGGGCCCGGGGCGGCGCAG
GCCCTTGCGGCCGAGCGGTCTTCCTGGCCTTCGGGCTGGGGCTGGGGCTGATCGAGGAGAAGCAGGCGGA
AGGCCGGAGGGCCGCCTCGGCCTGTCAGGAGATCCAGGCAATTTTTACACAGAAAACCAAGCGCGTGTCT
GACCCACTGGACACTCGATGCTGGCAGGGCTTCCGTCTGGAGGATTATCTGATAGGGCAAGCCATTGGCA
AGGGTTGCAATGCCGCTGTGTATGAAGCCACCATGCCCACGCTGCCCCAGCACCTGGAAAAGGCCAAACA
CCTTGGCCTTATAGGAAAGGGCCCGGATGTCGTCCTGAAGGGAGCAGACGGGGAGCAGGCTCCAGGGACT
CCCACCTTTCCCTTTGCCATCAAGATGATGTGGAATATCTCGGCAGGTTCCTCCAGCGAAGCCATCTTAA
GCAAAATGAGCCAGGAGCTGGTCCCGGCAAGCCGCGTGGCTTTGGCTGGAGAGTATGGAGCAGTTACTTA
CAGAAGATCCAGAGATGGTCCCAAGCAGCTTGCCCCACACCCTAACATCATCCGGGTTTTCCGCGCCTTC
ACCTCATCTGTGCCCCTCCTGCCGGGGGCCCTGGCTGACTATCCTGATATGCTGCCCCCACACTACTACC
CAGAAGGCCTGGGCCACGGTCGCACACTGTTCCTCGTTATGAAGAACTACCCCTGTACCCTGCGCCAGTA
CCTTGAGGAGCAGACTCCCAGTTCTCGCCTGGCTACCATGATGACCTTGCAGTTGCTGGAGGGCGTGGAC
CATCTGGTTCAGCAGGGCATTGCCCATCGGGATCTCAAGTCCGACAACATCCTTGTGGAGTGGGACTCAG
ATGGCTGTCCCTGGCTAGTGATCTCAGACTTTGGCTGCTGCCTGGCTGACCAGCATGTTGGCCTGCGGCT
GCCTTTCAACAGCTCCAGTGTAGAGCGTGGTGGCAATGGCTCCCTGATGGCCCCTGAGGTGTCCACAGCC
CATTCTGGCCCCAGTGCGGTAATTGACTACAGCAAAGCCGATACCTGGGCTGTGGGGGCCATCGCCTATG
AAATCTTTGGGCTTGCCAATCCCTTCTATGGCCAAGGCAGTGCCCACCTCGAGAGCCGCAGCTACCAGGA
AGCTCAGCTGCCTGAGATGCCTGAGTCGGTGCCTCCAGAGGCAAGACGGCTGGTGAGGTCACTGCTCCAG
CGAGAGGCCAGCAAGAGACCGTCTGCACGCTTAGCTGCAAATGTGCTGCACTTAAGCCTCTGGGGCGAGC
ATCTTCTAGCCCTGAAGAACCTGAAATTGGACAAGATGATCGCCTGGCTCTTGCAGCAGTCAGCAGCCAC
TCTGCTGGCTGACAGGCTGAGAGAGAAGAGCTGCGTGGAGACAAAGCTGCAGATGCTGTTTCTGGCTAAC
CTGGAGTGTGAGGCTCTCTGCCAGGCAGCCCTCCTCCTCTCTTCCTGGAGGGCAGCCCCATGA

Translation (580 aa):
MAVRQALGRGLQLGRALLLRFAPKPGPLFGWGKPGPAAAWGRGERPGQVVSPGAQPRPVGLPLPDRYRFF
RQSVAGLAARIQRQFMVRARGGAGPCGRAVFLAFGLGLGLIEEKQAEGRRAASACQEIQAIFTQKTKRVS
DPLDTRCWQGFRLEDYLIGQAIGKGCNAAVYEATMPTLPQHLEKAKHLGLIGKGPDVVLKGADGEQAPGT
PTFPFAIKMMWNISAGSSSEAILSKMSQELVPASRVALAGEYGAVTYRRSRDGPKQLAPHPNIIRVFRAF
TSSVPLLPGALADYPDMLPPHYYPEGLGHGRTLFLVMKNYPCTLRQYLEEQTPSSRLATMMTLQLLEGVD
HLVQQGIAHRDLKSDNILVEWDSDGCPWLVISDFGCCLADQHVGLRLPFNSSSVERGGNGSLMAPEVSTA
HSGPSAVIDYSKADTWAVGAIAYEIFGLANPFYGQGSAHLESRSYQEAQLPEMPESVPPEARRLVRSLLQ
REASKRPSARLAANVLHLSLWGEHLLALKNLKLDKMIAWLLQQSAATLLADRLREKSCVETKLQMLFLAN
LECEALCQAALLLSSWRAAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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