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Report for CCDS18750.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18750.1 Public Mus musculus 4 Nudc 23 108 98 CCDS HistoryNCBI Gene:18221Re-query CCDS DB by CCDS ID:18750.1Re-query CCDS DB by GeneID:18221See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18750.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030665.6 ENSMUSP00000030665.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030665.6Link to Ensembl Protein Viewer:ENSMUSP00000030665.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000030665Re-query CCDS DB by Protein ID:ENSMUSP00000030665
Original member Current member NCBI NM_010948.3 NP_035078.1 Accepted alive Link to Nucleotide Sequence:NM_010948.3Link to Protein Sequence:NP_035078.1Re-query CCDS DB by Nucleotide ID:NM_010948Re-query CCDS DB by Protein ID:NP_035078Link to BLAST:NP_035078.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035078.1 332 O35685 332 100% 0 0

Chromosomal Locations for CCDS 18750.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 133532748 133532799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133533195 133533313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133533406 133533489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133534228 133534542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133535510 133535575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133535668 133535871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133541139 133541216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133545805 133545885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (999 nt):
ATGGGAGGGGAGCAGGAGGAGGAGCGCTTCGACGGCATGCTGCTGGCCATGGCGCAGCAGCACGAGGGCG
GCGTGCAGGAGCTTGTGAACACCTTCTTCAGCTTCCTTCGACGCAAAACAGACTTTTTCATTGGAGGAGA
AGAGGGGATGGCAGAGAAGCTGATCACACAGACTTTCAACCACCACAACCAGCTGGCACAGAAGGCCCGG
AGAGAGAAGCGAGCTCGGCAGGAGACCGAGCGCAGGGAGAAGGCAGAGCGGGCAGCCAGGCTGGCCAAGG
AGGCCAAGGCAGAGACCCCGGGGCCACAGATCAAGGAGTTGACTGATGAGGAGGCAGAGCGACTGCAACT
GGAGATTGACCAGAAAAAGGATGCAGAGGATCAGGAGGCCCAGCTCAAGAACGGCAGCCTTGACTCACCA
GGAAAGCAGGATGCGGAGGACGAGGAGGACGAGGAGGATGAGAAGGACAAAGGAAAGCTGAAGCCCAACC
TAGGCAATGGGGCTGACCTGCCCAACTACCGCTGGACCCAGACCCTGGCAGAACTGGATCTGGCAGTGCC
CTTCCGGGTCAGCTTCCGGCTGAAGGGAAAGGATGTGGTGGTGGACATCCAGCGGCGGCATCTCCGGGTG
GGCCTTAAAGGACAGCCACCAGTGGTTGATGGAGAACTCTACAATGAAGTCAAGGTGGAGGAGAGCTCGT
GGCTCATCGAGGATGGCAAGGTGGTGACAGTGCATCTGGAGAAGATCAATAAGATGGAATGGTGGAACCG
CTTGGTTACCAGTGACCCCGAAATCAATACCAAGAAGATTAACCCTGAGAACTCCAAGCTATCAGACCTC
GACAGTGAGACTCGCAGCATGGTGGAAAAGATGATGTATGACCAGAGGCAGAAGTCCATGGGCTTGCCCA
CCTCTGATGAGCAGAAGAAACAGGAAATCCTGAAGAAGTTCATGGACCAGCACCCAGAGATGGATTTCTC
CAAGGCCAAATTCAACTAG

Translation (332 aa):
MGGEQEEERFDGMLLAMAQQHEGGVQELVNTFFSFLRRKTDFFIGGEEGMAEKLITQTFNHHNQLAQKAR
REKRARQETERREKAERAARLAKEAKAETPGPQIKELTDEEAERLQLEIDQKKDAEDQEAQLKNGSLDSP
GKQDAEDEEDEEDEKDKGKLKPNLGNGADLPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRV
GLKGQPPVVDGELYNEVKVEESSWLIEDGKVVTVHLEKINKMEWWNRLVTSDPEINTKKINPENSKLSDL
DSETRSMVEKMMYDQRQKSMGLPTSDEQKKQEILKKFMDQHPEMDFSKAKFN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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