NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS18731.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18731.1 Public Mus musculus 4 Eya3 23 108 98 CCDS HistoryNCBI Gene:14050Re-query CCDS DB by CCDS ID:18731.1Re-query CCDS DB by GeneID:14050See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 18731.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020197.13 ENSMUSP00000020197.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020197.13Link to Ensembl Protein Viewer:ENSMUSP00000020197.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000020197Re-query CCDS DB by Protein ID:ENSMUSP00000020197
Original member Current member EBI ENSMUST00000180250.7 ENSMUSP00000136812.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000180250.7Link to Ensembl Protein Viewer:ENSMUSP00000136812.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000180250Re-query CCDS DB by Protein ID:ENSMUSP00000136812
Original member NCBI NM_211357.2 NP_997596.1 Updated not alive Link to Nucleotide Sequence:NM_211357.2Link to Protein Sequence:NP_997596.1Re-query CCDS DB by Nucleotide ID:NM_211357Re-query CCDS DB by Protein ID:NP_997596
Current member NCBI NM_211357.3 NP_997596.1 Accepted alive Link to Nucleotide Sequence:NM_211357.3Link to Protein Sequence:NP_997596.1Re-query CCDS DB by Nucleotide ID:NM_211357Re-query CCDS DB by Protein ID:NP_997596Link to BLAST:NP_997596.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997596.1 416 P97480-2 416 100% 0 0

Chromosomal Locations for CCDS 18731.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 132670225 132670255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132689705 132689790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132692962 132693145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132694747 132694883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132699030 132699113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132701021 132701110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132704352 132704410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132706963 132707123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132709945 132710059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132711842 132711963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132719212 132719312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132721279 132721359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1251 nt):
ATGATTATACCTCACAAATGTATTCTGCAAACTTCAAGCACAAATGCCAGCCTGATACCCACTTCATCTG
CAATTGCCAATATTCCAGCAGCAGCTGTGGCCAGCATCTCAAACCAGGATTATCCCACCTATACTATTCT
TGGACAGAATCAGTACCAGGCCTGCTACCCCAGTTCCAGCTTTGGAGTCACAGGTCAGACTAACAGTGAT
GCTGAGACCACAACATTAGCAGCTACAACATACCAGACGGAGAAGCCTAGTGCTATGGTGCCTGCACCAG
CCACACAGAGGCTTCCCTCCGACTCCTCTGCAAGCCCACCTTTGTCCCAGACTACACCAAATAAAGATGC
TGATGATCAGGCCAGGAAAAACATGACTGTCAAGAACCGGGGCAAGAGGAAAGCTGATGCCAGCTCTTCC
CAGGACAGTGAATTGGAACGGGTATTTCTCTGGGACTTGGACGAAACCATCATCATCTTTCATTCCCTTC
TCACTGGATCCTATGCTCAGAAGTATGGAAAGGACCCAACAGTAGTAATTGGCTCAGGTTTAACCATGGA
AGAAATGATTTTTGAAGTGGCTGATACACATCTATTTTTCAATGACTTAGAGGAGTGTGACCAGGTGCAT
GTGGAAGATGTGGCTTCTGATGACAATGGCCAGGATTTGAGCAACTACAGTTTCTCCACAGATGGTTTCA
GTGGTTCAGGAGGCAGTGGTAGCCACGGCTCATCTGTGGGCGTTCAGGGAGGTGTGGACTGGATGAGGAA
ACTGGCCTTTCGCTACCGAAAAGTGAGGGAAATCTACGACAAGCATAAAAGCAATGTGGGTGGCCTCCTC
AGCCCCCAGAGGAAGGAAGCACTGCAGAGACTCAGAGCAGAGATCGAGGTGCTGACGGACTCCTGGTTAG
GAACTGCGCTCAAGTCCTTGCTTCTCATCCAGTCTCGAAAGAACTGTGCGAATGTTCTGATCACTACCAC
GCAGTTGGTTCCAGCCCTGGCCAAGGTTCTCCTGTATGGACTAGGAGAGATATTTCCTATTGAAAACATC
TACAGTGCTACCAAAATCGGTAAGGAGAGCTGCTTTGAGAGAATTGTTTCGAGGTTTGGGAAAAAAGTCA
CATATGTAGTGATTGGAGATGGACGAGATGAAGAAATTGCAGCCAAGCAGCACAACATGCCCTTCTGGAG
GATCACAAACCACGGAGATCTGGTGTCCCTGCACCAGGCTTTAGAGCTTGACTTCCTCTGA

Translation (416 aa):
MIIPHKCILQTSSTNASLIPTSSAIANIPAAAVASISNQDYPTYTILGQNQYQACYPSSSFGVTGQTNSD
AETTTLAATTYQTEKPSAMVPAPATQRLPSDSSASPPLSQTTPNKDADDQARKNMTVKNRGKRKADASSS
QDSELERVFLWDLDETIIIFHSLLTGSYAQKYGKDPTVVIGSGLTMEEMIFEVADTHLFFNDLEECDQVH
VEDVASDDNGQDLSNYSFSTDGFSGSGGSGSHGSSVGVQGGVDWMRKLAFRYRKVREIYDKHKSNVGGLL
SPQRKEALQRLRAEIEVLTDSWLGTALKSLLLIQSRKNCANVLITTTQLVPALAKVLLYGLGEIFPIENI
YSATKIGKESCFERIVSRFGKKVTYVVIGDGRDEEIAAKQHNMPFWRITNHGDLVSLHQALELDFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH