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Report for CCDS18727.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18727.1 Public Mus musculus 4 Atp5if1 23 108 98 CCDS HistoryNCBI Gene:11983Re-query CCDS DB by CCDS ID:18727.1Re-query CCDS DB by GeneID:11983See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18727.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067496.6 ENSMUSP00000064282.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067496.6Link to Ensembl Protein Viewer:ENSMUSP00000064282.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000067496Re-query CCDS DB by Protein ID:ENSMUSP00000064282
Original member NCBI NM_007512.4 NP_031538.2 Updated not alive Link to Nucleotide Sequence:NM_007512.4Link to Protein Sequence:NP_031538.2Re-query CCDS DB by Nucleotide ID:NM_007512Re-query CCDS DB by Protein ID:NP_031538
Current member NCBI NM_007512.5 NP_031538.2 Accepted alive Link to Nucleotide Sequence:NM_007512.5Link to Protein Sequence:NP_031538.2Re-query CCDS DB by Nucleotide ID:NM_007512Re-query CCDS DB by Protein ID:NP_031538Link to BLAST:NP_031538.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031538.2 106 O35143 106 100% 0 0

Chromosomal Locations for CCDS 18727.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 132530682 132530823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132533296 132533387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132533482 132533568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (321 nt):
ATGGCAGGCTCGGCGTTGGCAGTTCGGGCTCGGTTCGGTGTCTGGGGTATGAAGGTCCTGCAAACCCGAG
GCTTCGTCTCGGACTCGTCGGATAGCATGGATACGGGCGCTGGCTCCATCCGAGAAGCTGGTGGAGCCTT
CGGAAAACGAGAAAAGGCTGAAGAGGATCGGTACTTCCGAGAGAAGACTAAAGAACAGCTGGCTGCCCTG
AGGAAACACCATGAAGATGAGATTGACCACCATTCGAAGGAGATAGAGCGTCTGCAGAAGCAAATTGAAC
GCCATAAGAAGAAGATCCAACAACTAAAGAATAATCATTGA

Translation (106 aa):
MAGSALAVRARFGVWGMKVLQTRGFVSDSSDSMDTGAGSIREAGGAFGKREKAEEDRYFREKTKEQLAAL
RKHHEDEIDHHSKEIERLQKQIERHKKKIQQLKNNH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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