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Report for CCDS18726.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18726.1 Public Mus musculus 4 Sesn2 23 108 98 CCDS HistoryNCBI Gene:230784Re-query CCDS DB by CCDS ID:18726.1Re-query CCDS DB by GeneID:230784See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 18726.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030724.8 ENSMUSP00000030724.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030724.8Link to Ensembl Protein Viewer:ENSMUSP00000030724.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000030724Re-query CCDS DB by Protein ID:ENSMUSP00000030724
Original member Current member NCBI NM_144907.1 NP_659156.1 Accepted alive Link to Nucleotide Sequence:NM_144907.1Link to Protein Sequence:NP_659156.1Re-query CCDS DB by Nucleotide ID:NM_144907Re-query CCDS DB by Protein ID:NP_659156Link to BLAST:NP_659156.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659156.1 480 P58043 480 100% 0 0

Chromosomal Locations for CCDS 18726.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 132493716 132493802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132494464 132494608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132496885 132497075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132497372 132497490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132497953 132498103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132498937 132499149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132499245 132499427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132499766 132499963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132502563 132502628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132510064 132510153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1443 nt):
ATGATCGTAGCGGACTCCGAGTGCCATTCCGAGATCAAGGGCTACCTGCCGTTCACCAGGGGTGGTGTGG
CC
GGCCCCGAGACCCGAGAGGAGCATCGGGAGGGCCAGGCTCGGCGAGGCTCTCGAGGGCCCAGCGCTTT
C
ATTCCAGTGGAAGAGATCCTTCGGGAAGGAGCTGAGAGCCTGGAGCAGCACCTGGGGCTCGAGGCCCTG
ATG
TCCTCAGGGCGGGTGGACAACCTGGCGGTGGTGATGGGTCTACACCCGGACTACCTTAGCAGCTTCT
GG
CGCCTGCATTACCTGCTGCTGCATACGGATGGGCCCCTGGCCAGCTCCTGGCGCCACTACATTGCCAT
C
ATGGCTGCTGCCCGTCACCAGTGTTCTTACCTGGTGGGTTCCCACATGACTGAGTTCCTGCAGACCGGC
GGT
GACCCCGAGTGGCTGCTGGGCCTTCACCGGGCCCCTGAGAAGCTCCGCAAGCTCAGCGAGGTCAACA
AG
TTACTGGCGCATCGGCCGTGGCTCATCACCAAGGAGCATATCCAGGCCTTGCTGAAGACTGGCGAGCA
C
AGCTGGTCCCTGGCCGAACTCATCCAAGCACTGGTCCTGCTTACCCACTGCCACTCTCTGGCCTCCTTT
GTG
TTTGGCTGTGGAATACTTCCTGAGGGAGATGCAGAGGGCAGCCCTGCCTCCCAGGCACCTTCGCCTC
CC
AGTGAGCAAGGCACCCCCCCGAGCGGGGACCCACTGAACAACTCAGGGGGCTTTGAAGCCGCTCGTGA
C
GTAGAAGCTCTGATGGAACGCATGAGGCAGCTTCAGGAGAGCCTGCTGCGGGATGAGGGGGCTTCGCAG
GAG
GAAATGGAGAACCGTTTTGAGCTGGAGAAGTCAGAAAGCCTGCTGGTGACCCCCTCAGCGGATATCC
TG
GAGCCTTCTCCACACCCAGACATCCTATGCTTTGTGGAGGACCCCGCATTTGGATATGAAGACTTCAC
T
CGTCGAGGGACTCAGGCGCCCCCAACCTTCCGTGCCCAGGATTATACCTGGGAAGACCATGGCTACTCG
CTG
ATCCAGAGGCTCTACCCTGAGGGAGGGCAGCTGCTGGATGAGAAGTTCCAGGTAGCCTGCAGCCTCA
CC
TATAACACCATCGCCATGCACAGTGGCGTGGACACCTCCATGCTCCGCAGGGCCATCTGGAACTACAT
C
CACTGCGTCTTTGGCATCAGATACGATGACTATGATTACGGCGAGGTAAACCAGCTCCTGGAACGGAAC
CTC
AAAATCTATATCAAGACGGTGGCCTGCTACCCTGAGAAGACGACCCGTAGGATGTACAACCTCTTTT
GG
AGGCACTTCCGCCACTCAGAGAAGGTTCATGTGAACTTGCTGCTCCTTGAAGCCCGCATGCAAGCGGC
C
CTGCTCTATGCCCTGCGCGCCATCACCCGCTACATGACCTGA


Translation (480 aa):
MIVADSECHSEIKGYLPFTRGGVAGPETREEHREGQARRGSRGPSAFIPVEEILREGAESLEQHLGLEAL
M
SSGRVDNLAVVMGLHPDYLSSFWRLHYLLLHTDGPLASSWRHYIAIM
AAARHQCSYLVGSHMTEFLQTG
G
DPEWLLGLHRAPEKLRKLSEVNKLLAHRPWLITKEHIQ
ALLKTGEHSWSLAELIQALVLLTHCHSLASF
V
FGCGILPEGDAEGSPASQAPSPPSEQGTPPSGDPLNNSG
GFEAARDVEALMERMRQLQESLLRDEGASQ
E
EMENRFELEKSESLLVTPS
ADILEPSPHPDILCFVEDPAFGYEDFTRRGTQAPPTFRAQDYTWEDHGYS
L
IQRLYPEGGQLLDEKFQVACSLTYNTIAMHSGVDTSMLRRAIWNYIHCVFGI
RYDDYDYGEVNQLLERN
L
KIYIKTVACYPEKTTRRMYNLFWRHFRHSEK
VHVNLLLLEARMQAALLYALRAITRYMT



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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