NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS18706.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18706.1 Public Mus musculus 4 Pef1 23 108 98 CCDS HistoryNCBI Gene:67898Re-query CCDS DB by CCDS ID:18706.1Re-query CCDS DB by GeneID:67898See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 18706.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030563.5 ENSMUSP00000030563.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030563.5Link to Ensembl Protein Viewer:ENSMUSP00000030563.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000030563Re-query CCDS DB by Protein ID:ENSMUSP00000030563
Original member Current member EBI ENSMUST00000118199.7 ENSMUSP00000112638.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118199.7Link to Ensembl Protein Viewer:ENSMUSP00000112638.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118199Re-query CCDS DB by Protein ID:ENSMUSP00000112638
Original member Current member NCBI NM_026441.4 NP_080717.2 Accepted alive Link to Nucleotide Sequence:NM_026441.4Link to Protein Sequence:NP_080717.2Re-query CCDS DB by Nucleotide ID:NM_026441Re-query CCDS DB by Protein ID:NP_080717Link to BLAST:NP_080717.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080717.2 275 Q8BFY6 275 100% 0 0

Chromosomal Locations for CCDS 18706.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 130107627 130107650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130121168 130121441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130125063 130125218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130125654 130125797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 130127253 130127482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (828 nt):
ATGGCCAGCTATCCAAACGGACAGAGTTGCCCAGGAGCTGCAGGACAGGTGCCTGGAGTACCCCCGGGGG
GCTATTATCCTGGTCCTCCCCATGGTGGGGGCCAGTATGGCAGTGGACTGCCCCCAGGTGGTGGCTATGG
AGCTCCTGCCCCTGGAGGACCCTATGGATACCCCAGTGCTGGAGGAGTCCCCTCGGGAACTCCAAGTGGA
CCATATGGCGGTATACCTCCAGGGGGTCCCTATGGTCAGCTACCTCCAGGGGGTCCCTACGGTACCCAGC
CTGGACATTATGGACAGGGTGGTGTCCCCCCGAATGTGGATCCTGAGGCCTACTCCTGGTTCCAGTCAGT
GGATGCCGATCACAGTGGCTATATCTCCCTCAAGGAGCTGAAGCAGGCCCTAGTCAACTCCAACTGGTCC
TCATTCAATGACGAGACATGCCTCATGATGATAAACATGTTTGACAAGACCAAGTCTGGCCGCATTGATG
TCGCCGGCTTCTCAGCCTTATGGAAATTCCTCCAGCAGTGGAGGAACCTCTTTCAGCAGTATGACCGGGA
CCGCTCGGGCTCCATTAGCTCCACAGAGCTGCAGCAAGCGCTCTCCCAGATGGGCTACAACCTGAGCCCT
CAGTTCACGCAGCTCCTGGTTTCCCGGTACTGCGCACGCTCTGCTATTCCCGCCATGCAGCTTGACTGCT
TCATCAAGGTGTGTACCCAGCTGCAGGTGTTGACTGAGGCCTTCCGGGAAAAGGATACCGCTGTACAGGG
CAACATCCGGCTCAGCTTTGAGGACTTTGTCACCATGACGGCTTCAAGGATGCTATGA

Translation (275 aa):
MASYPNGQSCPGAAGQVPGVPPGGYYPGPPHGGGQYGSGLPPGGGYGAPAPGGPYGYPSAGGVPSGTPSG
PYGGIPPGGPYGQLPPGGPYGTQPGHYGQGGVPPNVDPEAYSWFQSVDADHSGYISLKELKQALVNSNWS
SFNDETCLMMINMFDKTKSGRIDVAGFSALWKFLQQWRNLFQQYDRDRSGSISSTELQQALSQMGYNLSP
QFTQLLVSRYCARSAIPAMQLDCFIKVCTQLQVLTEAFREKDTAVQGNIRLSFEDFVTMTASRML


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH