NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS18693.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18693.1 Public Mus musculus 4 Tssk3 23 108 98 CCDS HistoryNCBI Gene:58864Re-query CCDS DB by CCDS ID:18693.1Re-query CCDS DB by GeneID:58864See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18693.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000421.5 ENSMUSP00000000421.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000421.5Link to Ensembl Protein Viewer:ENSMUSP00000000421.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000000421Re-query CCDS DB by Protein ID:ENSMUSP00000000421
Original member Current member NCBI NM_080442.2 NP_536690.1 Accepted alive Link to Nucleotide Sequence:NM_080442.2Link to Protein Sequence:NP_536690.1Re-query CCDS DB by Nucleotide ID:NM_080442Re-query CCDS DB by Protein ID:NP_536690Link to BLAST:NP_536690.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_536690.1 268 Q9D2E1 268 100% 0 0

Chromosomal Locations for CCDS 18693.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 129489071 129489732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129490462 129490606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (807 nt):
ATGGAGGACTTTCTACTCTCCAATGGGTATCAGCTGGGCAAGACCATTGGGGAAGGGACCTACTCAAAAG
TCAAAGAAGCATTTTCCAAAAAACATCAAAGAAAAGTGGCAATTAAAATTATAGACAAGATGGGAGGGCC
AGAAGAGTTTATCCAGAGATTCCTGCCTCGTGAGCTCCAGATTGTCCGTACCCTGGACCACAAAAACATC
ATCCAGGTGTATGAGATGCTGGAGTCAGCAGATGGAAAAATCTACCTGGTGATGGAACTGGCTGAGGGAG
GGGATGTCTTTGACTGTGTGCTGAACGGAGGGCCACTTCCCGAGAGCCGGGCCAAGGCCCTCTTCCGCCA
GATGGTTGAGGCTATTCGCTATTGCCATGGCTGTGGCGTGGCCCACCGGGACCTTAAGTGTGAGAACGCC
TTGTTGCAGGGCTTCAACCTGAAGCTGACCGACTTTGGCTTTGCCAAGGTGCTACCCAAGTCACGCAGGG
AGCTGAGCCAGACCTTCTGTGGCAGCACAGCCTATGCCGCCCCTGAGGTGCTACAGGGCATACCCCATGA
TAGCAAGAAAGGTGATGTCTGGAGCATGGGTGTGGTCCTGTATGTAATGCTCTGTGCAAGTCTACCTTTT
GATGACACAGATATCCCCAAGATGCTGTGGCAGCAGCAGAAGGGGGTGTCCTTCCCCACTCATTTGGGCA
TCTCAACCGAATGCCAGGACCTGCTCAAGCGGCTCCTGGAACCAGACATGATACTCCGGCCTTCAATCGA
AGAAGTTAGTTGGCACCCATGGCTAGCAAGCACTTGA

Translation (268 aa):
MEDFLLSNGYQLGKTIGEGTYSKVKEAFSKKHQRKVAIKIIDKMGGPEEFIQRFLPRELQIVRTLDHKNI
IQVYEMLESADGKIYLVMELAEGGDVFDCVLNGGPLPESRAKALFRQMVEAIRYCHGCGVAHRDLKCENA
LLQGFNLKLTDFGFAKVLPKSRRELSQTFCGSTAYAAPEVLQGIPHDSKKGDVWSMGVVLYVMLCASLPF
DDTDIPKMLWQQQKGVSFPTHLGISTECQDLLKRLLEPDMILRPSIEEVSWHPWLAST


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH