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Report for CCDS18688.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18688.1 Public Mus musculus 4 Rbbp4 23 108 98 CCDS HistoryNCBI Gene:19646Re-query CCDS DB by CCDS ID:18688.1Re-query CCDS DB by GeneID:19646See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18688.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102598.3 ENSMUSP00000099658.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102598.3Link to Ensembl Protein Viewer:ENSMUSP00000099658.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102598Re-query CCDS DB by Protein ID:ENSMUSP00000099658
Original member Current member NCBI NM_009030.3 NP_033056.2 Accepted alive Link to Nucleotide Sequence:NM_009030.3Link to Protein Sequence:NP_033056.2Re-query CCDS DB by Nucleotide ID:NM_009030Re-query CCDS DB by Protein ID:NP_033056Link to BLAST:NP_033056.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033056.2 425 Q60972 425 100% 0 0

Chromosomal Locations for CCDS 18688.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 129310092 129310157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129317648 129317758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129317862 129317919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129318444 129318520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129320469 129320546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129321854 129321980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129322079 129322239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129322353 129322468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129322696 129322869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129328588 129328733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129334497 129334644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129335218 129335233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1278 nt):
ATGGCTGACAAGGAAGCGGCCTTTGACGACGCAGTGGAAGAACGGGTGATCAACGAGGAGTACAAAATAT
GGAAGAAGAACACCCCTTTTCTTTATGATTTGGTGATGACCCATGCCCTGGAGTGGCCCAGCTTAACTGC
CCAGTGGCTTCCAGATGTGACCAGGCCTGAAGGGAAAGATTTCAGCATTCATCGGCTTGTCCTGGGAACA
CACACATCTGATGAACAGAACCACCTGGTGATTGCCAGTGTCCAGCTCCCTAATGATGATGCTCAGTTTG
ATGCATCCCATTATGACAGTGAAAAAGGAGAATTTGGAGGTTTTGGTTCTGTCAGTGGGAAAATTGAAAT
AGAAATCAAGATCAACCATGAAGGAGAAGTGAACAGGGCCCGGTACATGCCTCAGAACCCCTGCATCATT
GCAACAAAGACTCCATCCAGTGATGTTCTTGTTTTTGACTACACAAAGCACCCTTCTAAACCAGACCCTT
CTGGAGAATGCAACCCCGATTTGCGTCTCCGTGGACATCAGAAGGAAGGTTATGGGCTTTCTTGGAATCC
AAATCTCAGTGGGCACTTACTTAGTGCTTCAGATGACCATACCATCTGCCTGTGGGACATCAGTGCAGTT
CCAAAAGAAGGAAAGGTGGTGGATGCAAAGACCATCTTCACGGGGCATACAGCAGTAGTGGAGGACGTGT
CCTGGCATCTGCTCCACGAGTCTCTATTTGGCTCAGTTGCTGATGACCAGAAGCTTATGATTTGGGACAC
TCGTTCAAACAATACTTCCAAGCCAAGCCACTCGGTTGATGCTCACACAGCTGAAGTGAATTGCTTATCT
TTCAATCCTTATAGTGAGTTCATTCTTGCCACAGGATCGGCTGACAAGACTGTTGCCTTGTGGGATCTGA
GGAATCTGAAACTCAAGTTGCACTCCTTTGAATCCCATAAGGATGAAATATTCCAAGTTCAGTGGTCACC
TCACAATGAGACTATCTTAGCTTCCAGTGGTACCGATCGTAGGCTGAATGTCTGGGATCTAAGTAAAATT
GGAGAAGAGCAGTCCCCAGAAGATGCAGAGGATGGCCCACCAGAATTGTTGTTTATTCATGGTGGTCACA
CTGCCAAGATATCTGACTTCTCCTGGAATCCCAATGAGCCTTGGGTGATTTGTTCTGTATCAGAAGACAA
TATCATGCAAGTGTGGCAGATGGCGGAGAACATTTACAATGATGAAGATCCTGAAGGAAGTGTGGATCCA
GAGGGACAAGGGTCCTAG

Translation (425 aa):
MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGT
HTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCII
ATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAV
PKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLS
FNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKI
GEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSVDP
EGQGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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