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Report for CCDS18607.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18607.1 Public Mus musculus 4 Trit1 23 108 98 CCDS HistoryNCBI Gene:66966Re-query CCDS DB by CCDS ID:18607.1Re-query CCDS DB by GeneID:66966See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18607.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102649.3 ENSMUSP00000099709.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102649.3Link to Ensembl Protein Viewer:ENSMUSP00000099709.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102649Re-query CCDS DB by Protein ID:ENSMUSP00000099709
Original member Current member NCBI NM_025873.3 NP_080149.2 Accepted alive Link to Nucleotide Sequence:NM_025873.3Link to Protein Sequence:NP_080149.2Re-query CCDS DB by Nucleotide ID:NM_025873Re-query CCDS DB by Protein ID:NP_080149Link to BLAST:NP_080149.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080149.2 467 Q80UN9-1 467 100% 0 0

Chromosomal Locations for CCDS 18607.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 123016610 123016783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 123039446 123039586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 123043713 123043811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 123044491 123044636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 123046875 123047017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 123048769 123048880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 123049152 123049264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 123049477 123049554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 123052066 123052175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 123052484 123052601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 123054123 123054292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1404 nt):
ATGGCGGCTGCGGCTGCTGCACGAGCAGTTCCTGTGAGCTCTGGATTCCGAGGCCTGCGGCGAACACTGC
CACTTGTAGTGATTCTCGGGGCTACTGGGACTGGCAAGTCCACCCTGGCTCTGCAGTTAGGCCAGCGGCT
CGGCGGCGAGATCGTCAGCGCCGACTCCATGCAGGTCTATGAAGGGCTAGACATCATCACCAATAAGGTC
TCTGCCCAAGAGCAGAAGATGTGCCAGCACCACATGATCAGCTTTGTGGATCCACTTGTGACCAGCTACA
CCGTGGTGGACTTTAGGAACAAAGCAACGGCCCTGATTGAAGATATTTTTGCTCGAGACAAAATTCCCAT
TGTGGTGGGAGGAACCAATTATTACATTGAATCTCTGCTCTGGAAAGTTCTTATTACTACCAAGCCCCAG
GAGATGGGCACTGGGAAAGTGGTTGATCGGAAAGTAGAGCTTGAAAAGGAAGATGGTCATGAACTCCATA
AACGGCTAAGCCAGGTGGACCCAGAAATGGCCGCCAAGCTACACCCGCATGACAAACGCAAAGTGGCCAG
GAGCTTGCAAGTGTTTGAAGAAACAGGAATCTCTCACAGTGAATTCCTTCATCGTCAGCACGCAGAGGAA
GGCGGTGGTCCTCTTGGAGGCCCTCTCAGGTTCCCTAACCCATGCATCCTCTGGCTCCATGCTGACCAGG
CAGTTCTAGATGAGCGCTTGGATAAAAGAGTGGATGACATGCTTGCTGCCGGACTCTTGGAAGAGCTGAG
AGGTTTTCACAGACGTTATAATCTTAAGAACATTTCAGAAAATAGCCAGGACTATCAACACGGTATCTTC
CAGTCAATTGGCTTCAAGGAATTTCACGAGTACCTGACCACTGAGGGGAAATGCACACCAGAGACTAGTA
ACCAGCTTCTAAAGAAAGGTATTGAGGCTCTGAAACAAGTAACTAAGAGATATGCCCGGAAACAGAACCG
ATGGGTTAAAAACCGCTTTTTGAGCAGACCTGGGCCCAGTGTCCCCCCGGTATATGGCTTAGAAGTATCT
GATGTTTCCAAGTGGGAGGAGTCTGTTCTGGAACCTGCTCTCAATATAGTACAAAGTTTCATCCAGGGTC
ACAAACCTACAGCCATGCCAGTGAAGATGGCATACAATGAAAGTGAGAACAAGAGAAGTTACCACATGTG
TGACCTCTGTGACCGGATCATCATTGGGGACCGGGAATGGGCAGCACATTTAAAATCCAAATCTCACTTG
CACCAATTGAAGAAAAGAAGAAGGTTGGACTTAGACGCTGTCAGTGCCACAGGAAGTCAAAGTAATTCCC
CAGACTGTGACCCGGAACGCATCGAGGGGGAATCCTCGGGGCAGCACAATCAAGAGCTGAAGGCCAGTGT
TTGA

Translation (467 aa):
MAAAAAARAVPVSSGFRGLRRTLPLVVILGATGTGKSTLALQLGQRLGGEIVSADSMQVYEGLDIITNKV
SAQEQKMCQHHMISFVDPLVTSYTVVDFRNKATALIEDIFARDKIPIVVGGTNYYIESLLWKVLITTKPQ
EMGTGKVVDRKVELEKEDGHELHKRLSQVDPEMAAKLHPHDKRKVARSLQVFEETGISHSEFLHRQHAEE
GGGPLGGPLRFPNPCILWLHADQAVLDERLDKRVDDMLAAGLLEELRGFHRRYNLKNISENSQDYQHGIF
QSIGFKEFHEYLTTEGKCTPETSNQLLKKGIEALKQVTKRYARKQNRWVKNRFLSRPGPSVPPVYGLEVS
DVSKWEESVLEPALNIVQSFIQGHKPTAMPVKMAYNESENKRSYHMCDLCDRIIIGDREWAAHLKSKSHL
HQLKKRRRLDLDAVSATGSQSNSPDCDPERIEGESSGQHNQELKASV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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