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Report for CCDS18552.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18552.1 Public Mus musculus 4 Mpl 23 108 98 CCDS HistoryNCBI Gene:17480Re-query CCDS DB by CCDS ID:18552.1Re-query CCDS DB by GeneID:17480See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18552.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102671.9 ENSMUSP00000099732.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102671.9Link to Ensembl Protein Viewer:ENSMUSP00000099732.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102671Re-query CCDS DB by Protein ID:ENSMUSP00000099732
Original member NCBI NM_010823.3 NP_034953.2 Updated not alive Link to Nucleotide Sequence:NM_010823.3Link to Protein Sequence:NP_034953.2Re-query CCDS DB by Nucleotide ID:NM_010823Re-query CCDS DB by Protein ID:NP_034953
Current member NCBI NM_010823.4 NP_034953.2 Accepted alive Link to Nucleotide Sequence:NM_010823.4Link to Protein Sequence:NP_034953.2Re-query CCDS DB by Nucleotide ID:NM_010823Re-query CCDS DB by Protein ID:NP_034953Link to BLAST:NP_034953.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034953.2 625 Q08351-1 625 100% 0 0

Chromosomal Locations for CCDS 18552.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 118443429 118443680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118444017 118444104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118446052 118446148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118446355 118446514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118448546 118448688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118448881 118449062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118454459 118454585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118455118 118455280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118455669 118455943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118456676 118456854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118457108 118457240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118457393 118457471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1878 nt):
ATGCCCTCTTGGGCCCTCTTCATGGTCACCTCCTGCCTCCTCTTGGCCCTTCCAAACCAGGCACAAGTCA
CCAGCCAAGATGTCTTCTTGCTGGCCTTGGGCACAGAGCCCCTGAACTGCTTCTCCCAAACATTTGAGGA
CCTCACCTGCTTCTGGGATGAGGAAGAGGCAGCACCCAGTGGGACATACCAGCTGCTGTATGCCTACCGA
GGAGAGAAGCCCCGTGCATGCCCCCTGTATTCCCAGAGTGTGCCCACCTTTGGAACCCGGTATGTGTGCC
AGTTTCCAGCCCAGGATGAAGTGCGCCTCTTCTTTCCGCTGCACCTCTGGGTGAAGAATGTGTCCCTCAA
CCAGACTTTGATCCAGCGGGTGCTGTTTGTGGATAGTGTGGGCCTGCCAGCTCCCCCCAGGGTCATCAAG
GCCAGGGGTGGGAGCCAACCAGGGGAACTTCAGATCCACTGGGAGGCCCCTGCTCCTGAAATCAGTGACT
TCCTGAGGCATGAACTCCGCTATGGCCCCACGGACTCCAGCAACGCCACTGCCCCCTCCGTCATTCAGCT
GCTCTCCACAGAAACCTGCTGCCCCACTTTGTGGATGCCGAACCCAGTCCCTGTTCTTGACCAGCCTCCG
TGTGTTCATCCGACAGCATCCCAACCGCATGGACCAGCTCCATTTCTGACAGTGAAGGGTGGAAGCTGTC
TCGTCTCAGGCCTCCAGGCTGGCAAATCCTACTGGCTCCAGCTACGCAGCCAACCCGACGGGGTCTCCCT
TCGTGGCTCCTGGGGACCCTGGTCCTTCCCTGTGACTGTGGATCTTCCAGGAGATGCAGTGACAATTGGA
CTTCAGTGCTTTACCTTGGATCTGAAGATGGTCACCTGCCAGTGGCAGCAACAAGACCGCACTAGCTCCC
AAGGCTTCTTCCGCCACAGCAGGACGAGGTGCTGCCCCACAGACAGGGACCCCACCTGGGAGAAATGTGA
AGAGGAGGAACCGCGTCCAGGATCACAGCCCGCTCTCGTCTCCCGCTGCCACTTCAAGTCACGAAATGAC
AGTGTTATTCACATCCTTGTAGAGGTGACCACAGCGCAAGGTGCCGTTCACAGCTACCTGGGCTCCCCTT
TTTGGATCCACCAGGCTGTGCTCCTTCCCACCCCGAGCCTGCACTGGAGGGAGGTCTCAAGTGGAAGGCT
GGAGTTGGAGTGGCAGCACCAGTCATCTTGGGCAGCTCAAGAGACCTGCTACCAGCTCCGGTACACGGGA
GAAGGCCGTGAGGACTGGAAGGTGCTGGAGCCATCTCTCGGTGCCCGGGGAGGGACCCTAGAGCTGCGCC
CCCGAGCTCGCTACAGCTTGCAGCTGCGTGCCAGGCTCAACGGCCCCACCTACCAAGGTCCCTGGAGCGC
CTGGTCTCCCCCAGCTAGGGTGTCCACGGGCTCCGAGACTGCTTGGATCACCTTGGTGACTGCTCTGCTC
CTGGTGCTGAGCCTCAGTGCCCTTCTGGGCCTACTGCTGCTAAAGTGGCAATTTCCTGCGCACTACAGGA
GACTGAGGCATGCTTTGTGGCCCTCGCTTCCAGACCTACACCGGGTCCTAGGCCAGTACCTCAGAGACAC
TGCAGCCCTAAGTCCTTCTAAGGCCACGGTTACCGATAGCTGTGAAGAAGTGGAACCCAGCCTCCTGGAA
ATCCTCCCTAAGTCCTCAGAGAGCACTCCTTTACCTCTGTGTCCCTCCCAACCTCAGATGGACTACAGAG
GACTGCAACCTTGCCTGCGGACCATGCCCCTGTCTGTGTGTCCACCCATGGCTGAGACGGGGTCCTGCTG
CACCACACACATTGCCAACCACTCCTACCTACCACTAAGCTATTGGCAGCAGCCCTGA

Translation (625 aa):
MPSWALFMVTSCLLLALPNQAQVTSQDVFLLALGTEPLNCFSQTFEDLTCFWDEEEAAPSGTYQLLYAYR
GEKPRACPLYSQSVPTFGTRYVCQFPAQDEVRLFFPLHLWVKNVSLNQTLIQRVLFVDSVGLPAPPRVIK
ARGGSQPGELQIHWEAPAPEISDFLRHELRYGPTDSSNATAPSVIQLLSTETCCPTLWMPNPVPVLDQPP
CVHPTASQPHGPAPFLTVKGGSCLVSGLQAGKSYWLQLRSQPDGVSLRGSWGPWSFPVTVDLPGDAVTIG
LQCFTLDLKMVTCQWQQQDRTSSQGFFRHSRTRCCPTDRDPTWEKCEEEEPRPGSQPALVSRCHFKSRND
SVIHILVEVTTAQGAVHSYLGSPFWIHQAVLLPTPSLHWREVSSGRLELEWQHQSSWAAQETCYQLRYTG
EGREDWKVLEPSLGARGGTLELRPRARYSLQLRARLNGPTYQGPWSAWSPPARVSTGSETAWITLVTALL
LVLSLSALLGLLLLKWQFPAHYRRLRHALWPSLPDLHRVLGQYLRDTAALSPSKATVTDSCEEVEPSLLE
ILPKSSESTPLPLCPSQPQMDYRGLQPCLRTMPLSVCPPMAETGSCCTTHIANHSYLPLSYWQQP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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