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Report for CCDS18550.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18550.1 Public Mus musculus 4 Elovl1 23 108 98 CCDS HistoryNCBI Gene:54325Re-query CCDS DB by CCDS ID:18550.1Re-query CCDS DB by GeneID:54325See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18550.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102673.10 ENSMUSP00000099734.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102673.10Link to Ensembl Protein Viewer:ENSMUSP00000099734.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000102673Re-query CCDS DB by Protein ID:ENSMUSP00000099734
Original member NCBI NM_001039175.2 NP_001034264.1 Updated not alive Link to Nucleotide Sequence:NM_001039175.2Link to Protein Sequence:NP_001034264.1Re-query CCDS DB by Nucleotide ID:NM_001039175Re-query CCDS DB by Protein ID:NP_001034264
Current member NCBI NM_001039175.3 NP_001034264.1 Accepted alive Link to Nucleotide Sequence:NM_001039175.3Link to Protein Sequence:NP_001034264.1Re-query CCDS DB by Nucleotide ID:NM_001039175Re-query CCDS DB by Protein ID:NP_001034264Link to BLAST:NP_001034264.1

Chromosomal Locations for CCDS 18550.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 118430550 118430555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118431063 118431143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118431266 118431322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118431409 118431514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118431597 118431733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118431898 118432119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (609 nt):
ATGCGGTTTCTGATGTCTGGTTGGCTGAGTACCTACACCTGGCGCTGTGACCCCATAGACTTTTCCAATA
GCCCTGAAGCACTTCGGATGGTTCGAGTGGCCTGGCTCTTCATGCTTTCCAAGGTCATTGAGCTGATGGA
CACAGTGATATTTATCCTCCGGAAGAAGGACGGGCAAGTGACCTTCCTCCATGTCTTCCACCACTCGGTG
CTTCCCTGGAGTTGGTGGTGGGGGATAAAAATTGCTCCAGGAGGAATGGGCTCCTTCCATGCCATGATAA
ACTCCTCTGTACATGTCGTCATGTACCTCTACTATGGATTGTCTGCCCTTGGCCCTGTGGCCCAGCCCTA
CCTTTGGTGGAAGAAACATATGACTGCCATTCAGCTGATCCAGTTTGTCCTGGTCTCACTGCACATCAGC
CAATACTACTTCATGCCCAGCTGCAACTACCAGTACCCCATCATCATCCACCTCATCTGGATGTATGGCA
CCATCTTCTTCATACTGTTCTCCAATTTCTGGTATCACTCTTACACCAAGGGGAAGCGGCTGCCCCGTGC
AGTTCAGCAAAATGGAGCTCCAGCTACCACCAAGGTCAAGGCCAACTGA

Translation (202 aa):
MRFLMSGWLSTYTWRCDPIDFSNSPEALRMVRVAWLFMLSKVIELMDTVIFILRKKDGQVTFLHVFHHSV
LPWSWWWGIKIAPGGMGSFHAMINSSVHVVMYLYYGLSALGPVAQPYLWWKKHMTAIQLIQFVLVSLHIS
QYYFMPSCNYQYPIIIHLIWMYGTIFFILFSNFWYHSYTKGKRLPRAVQQNGAPATTKVKAN


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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