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Report for CCDS18494.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18494.1 Public Mus musculus 4 Efcab14 23 108 98 CCDS HistoryNCBI Gene:230648Re-query CCDS DB by CCDS ID:18494.1Re-query CCDS DB by GeneID:230648See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18494.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074425.12 ENSMUSP00000074025.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074425.12Link to Ensembl Protein Viewer:ENSMUSP00000074025.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000074425Re-query CCDS DB by Protein ID:ENSMUSP00000074025
Original member Current member NCBI NM_172698.2 NP_766286.2 Accepted alive Link to Nucleotide Sequence:NM_172698.2Link to Protein Sequence:NP_766286.2Re-query CCDS DB by Nucleotide ID:NM_172698Re-query CCDS DB by Protein ID:NP_766286Link to BLAST:NP_766286.2

Chromosomal Locations for CCDS 18494.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 115738659 115738840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115740392 115740540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115746458 115746603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115752921 115753019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115756433 115756543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115758809 115758895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115759870 115760061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115762218 115762298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115764572 115764683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115766393 115766512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115773838 115774005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115775061 115775203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1590 nt):
ATGAAAAAGCGCAAAGAGCTCAATGCGTTGATCGGCCTGGCTGGTGACCATCGGAGAAAGAAGACCAAGC
AAGGCTCAGGCAGCCACCGCCTGCTTCGCACTGAGCCTCCTGACTCAGACTCAGAGTCCAGCACAGACGA
AGAGGAATTTGGAGCAATTGGAAATCGCTCTCGTTTTGTCAAGGGAGACTATGCCCGATGCTGCAAGATC
TGCTGTCCCCTCTGTGCCTTTGTCATCCTCGCAGCCTGCGTTGTGGCCTCTGTGGGCTTGGTGTGGATGC
AAATGGCTCTCAAGGAGGATCTGGATGTCCTCAAGGAAAAATTTAGAACAATGGAGTCTAATCAGAAGAG
CTCATTCCAGGAAATCCCCAAACTTAATGAGGAACTTCTCAGCAAACAAAAACAACTTGAGAAGATTGAG
TCTGGGGAGCTGGGCTTAAGCAGAGTCTGGATCAACATCACAGAAATGAATAAGCAGATTTCTCTCTTGA
GTTCTGCAGTAAACCACCTAAAAGCCAGCGTCAAGTCAGCCGCAGACTTACTTAGTCTGCCTAGCACTGT
AGAAGGACTTCAGAAGAGTGTGGCTTCCATTGGCAATACTTTAAACAGTGTCCACCTTGCTGTAGAGGTG
ATACAGAAGACTGTGGATGAGCACAGGACAACCTTGGGGTTACTGCAGGGCAGTATGGAGAACAATGGAA
GCAACCAGATCTTGCCATCACCTTCACCTCCATCAGAGCTTGACAATAAATCCCACAGTGAAAGTGCAAA
ACAGGATATCCTGTACCTGCACAACTCCTTAGAGGAAGTCAACAGTACTGTAGTGGAATACCAGAGACAG
AATGACCTTAAACTCAAGGGAATGAGCGAGACCCTCAGTAACCTGACACAGAGACTCAGCCTGATAGAAA
GCCATGTGGTTGCACTGAGCAAGGCAGAACAGAGAACAAACGTGAGCTCCAGCACGATGGAGAATAGGGC
TGCCACTCTGAAAAGAGAGTCTTTGGTGACCAACAGAAGTGACACTGTACAGGCGCAAAGCATGAAGAAA
GAAGATAATTCAAATTCTCAGGTATCCGAGCTTCGAGAAAAACTGCAGCTGATCAGTGCTCTCACAAACA
AACCTGAAAGCAACAGGCCTCCGGAGACCACAGATGAAGAGCAAGTACAGAACTTCACATCAGATCCTTC
AGCATTGCCAGAATTTTCACAGCTTCTTAGAAACCAAATTGAGACCCAAGTAAAACCTCTCTCCCTGCCT
GGGATTTCTAGCATCAAAGATCTTCAGGATTTATTCCACAAGACTGGTCAAGATGTGGATGGGATGCTGA
CCTACCAGGAACTCTGGAACTCCCTAGGTTCTGCCATGCCAAGACCAGAGAGCTTGAGAGCATTTGATTC
GAATGGAGATGGAAGATACTCTTTCCTGGAACTAAGATTAGCTTTAGGATGCCTAAAGCCAAAATGTGGT
CTGATGAAACAGGAAATCATATTCTTTCTTCCTAATTGTTCACTCAAAAGGAGCTATGGGTTTTCTGTCC
AGAGGATACCACATGGAGCAGGCGTGCTTGGAGCAGGAGCCTTCTGGTGA

Translation (529 aa):
MKKRKELNALIGLAGDHRRKKTKQGSGSHRLLRTEPPDSDSESSTDEEEFGAIGNRSRFVKGDYARCCKI
CCPLCAFVILAACVVASVGLVWMQMALKEDLDVLKEKFRTMESNQKSSFQEIPKLNEELLSKQKQLEKIE
SGELGLSRVWINITEMNKQISLLSSAVNHLKASVKSAADLLSLPSTVEGLQKSVASIGNTLNSVHLAVEV
IQKTVDEHRTTLGLLQGSMENNGSNQILPSPSPPSELDNKSHSESAKQDILYLHNSLEEVNSTVVEYQRQ
NDLKLKGMSETLSNLTQRLSLIESHVVALSKAEQRTNVSSSTMENRAATLKRESLVTNRSDTVQAQSMKK
EDNSNSQVSELREKLQLISALTNKPESNRPPETTDEEQVQNFTSDPSALPEFSQLLRNQIETQVKPLSLP
GISSIKDLQDLFHKTGQDVDGMLTYQELWNSLGSAMPRPESLRAFDSNGDGRYSFLELRLALGCLKPKCG
LMKQEIIFFLPNCSLKRSYGFSVQRIPHGAGVLGAGAFW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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