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Report for CCDS18420.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18420.1 Public Mus musculus 4 Dhcr24 23 108 98 CCDS HistoryNCBI Gene:74754Re-query CCDS DB by CCDS ID:18420.1Re-query CCDS DB by GeneID:74754See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18420.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047973.3 ENSMUSP00000038063.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047973.3Link to Ensembl Protein Viewer:ENSMUSP00000038063.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000047973Re-query CCDS DB by Protein ID:ENSMUSP00000038063
Original member NCBI NM_053272.2 NP_444502.2 Updated not alive Link to Nucleotide Sequence:NM_053272.2Link to Protein Sequence:NP_444502.2Re-query CCDS DB by Nucleotide ID:NM_053272Re-query CCDS DB by Protein ID:NP_444502
Current member NCBI NM_053272.3 NP_444502.2 Accepted alive Link to Nucleotide Sequence:NM_053272.3Link to Protein Sequence:NP_444502.2Re-query CCDS DB by Nucleotide ID:NM_053272Re-query CCDS DB by Protein ID:NP_444502Link to BLAST:NP_444502.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444502.2 516 Q8VCH6 516 100% 0 0

Chromosomal Locations for CCDS 18420.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 106561167 106561397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 106564401 106564556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 106571412 106571517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 106572225 106572343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 106573728 106573991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 106578190 106578333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 106585790 106585987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 106586345 106586523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 106586612 106586765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1551 nt):
ATGGAGCCCGCCGTGTCGCTGGCCGTGTGCGCGCTGCTCTTTCTGCTCTGGGTGCGAGTGAAGGGGTTGG
AGTTCGTTCTCATCCACCAGCGCTGGGTGTTCGTGTGCCTCTTCTTGCTGCCGCTCTCGCTCATCTTCGA
TATCTACTACTACGTGCGCGCCTGGGTGGTGTTCAAGCTGAGCAGTGCGCCGCGCCTGCACGAGCAGCGC
GTGCGGGACATCCAGAAACAGGTCCGGGAATGGAAGGAACAGGGCAGTAAGACCTTCATGTGCACGGGGC
GCCCAGGCTGGCTCACTGTCTCGCTGCGAGTCGGAAAGTACAAGAAGACCCATAAGAACATCATGATCAA
CCTGATGGACATCCTGGAGGTGGACACCAAGAAACAGATTGTTCGAGTGGAGCCCTTGGTGTCTATGGGT
CAGGTGACAGCTTTGCTGAACTCCATTGGCTGGACCCTGCCTGTGTTGCCTGAGCTTGATGACCTCACAG
TGGGGGGCCTGATCATGGGCACAGGCATCGAGTCATCGTCCCACAAGTATGGCCTGTTCCAACACATTTG
CACTGCCTACGAGCTGATCCTGGCAGACGGCAGCTTTGTGCGCTGCACACCGTCTGAAAACTCAGACCTG
TTCTATGCCGTGCCCTGGTCCTGTGGGACCCTGGGCTTCCTGGTGGCTGCCGAGATCCGGATCATCCCGG
CCAAGAAGTATGTCAAGCTGCGGTTTGAGCCTGTTCGGGGCCTGGAGGCCATCTGTGAAAAATTCACCCG
CGAGTCCCAGCGGCTGGAGAACCACTTCGTGGAAGGGTTGCTGTACTCCCTGGATGAGGCTGTCATCATG
ACAGGGGTCATGACGGACGACGTAGAGCCCAGCAAGCTGAATAGCATTGGCAGTTACTACAAGCCCTGGT
TCTTCAAGCATGTGGAGAACTACCTGAAGACAAACCGGGAGGGCCTCGAATACATTCCCCTGAGACACTA
CTACCACCGACACACGCGCAGCATCTTCTGGGAGCTCCAGGACATCATCCCTTTCGGCAACAACCCCATC
TTCCGCTACCTCTTCGGCTGGATGGTGCCTCCCAAGATCTCCCTCCTGAAGCTGACCCAGGGCGAGACGC
TACGCAAGCTGTACGAGCAGCACCACGTGGTGCAGGACATGCTGGTGCCCATGAAGTGCATGTCACAGGC
CCTGCATACCTTCCAAAATGACATCCACGTCTACCCCATCTGGCTGTGCCCATTCATCCTGCCCAGCCAG
CCAGGACTAGTGCATCCCAAGGGAGATGAAGCAGAGCTCTACGTGGACATCGGGGCATACGGGGAGCCAC
GTGTGAAGCACTTCGAGGCCAGGTCCTGCATGAGGCAGCTGGAGAAGTTTGTGCGGAGTGTGCACGGGTT
CCAAATGTTATACGCCGATTGCTATATGAACCGCGAGGAATTCTGGGAGATGTTCGATGGCTCCTTGTAC
CACAAGCTGCGCAAGCAGCTGGGCTGCCAGGACGCCTTCCCTGAGGTGTACGACAAGATCTGCAAGGCGG
CAAGGCACTGA

Translation (516 aa):
MEPAVSLAVCALLFLLWVRVKGLEFVLIHQRWVFVCLFLLPLSLIFDIYYYVRAWVVFKLSSAPRLHEQR
VRDIQKQVREWKEQGSKTFMCTGRPGWLTVSLRVGKYKKTHKNIMINLMDILEVDTKKQIVRVEPLVSMG
QVTALLNSIGWTLPVLPELDDLTVGGLIMGTGIESSSHKYGLFQHICTAYELILADGSFVRCTPSENSDL
FYAVPWSCGTLGFLVAAEIRIIPAKKYVKLRFEPVRGLEAICEKFTRESQRLENHFVEGLLYSLDEAVIM
TGVMTDDVEPSKLNSIGSYYKPWFFKHVENYLKTNREGLEYIPLRHYYHRHTRSIFWELQDIIPFGNNPI
FRYLFGWMVPPKISLLKLTQGETLRKLYEQHHVVQDMLVPMKCMSQALHTFQNDIHVYPIWLCPFILPSQ
PGLVHPKGDEAELYVDIGAYGEPRVKHFEARSCMRQLEKFVRSVHGFQMLYADCYMNREEFWEMFDGSLY
HKLRKQLGCQDAFPEVYDKICKAARH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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