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Report for CCDS18405.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18405.1 Public Mus musculus 4 Dynlt5 23 108 98 CCDS HistoryNCBI Gene:67344Re-query CCDS DB by CCDS ID:18405.1Re-query CCDS DB by GeneID:67344See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18405.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030248.11 ENSMUSP00000030248.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030248.11Link to Ensembl Protein Viewer:ENSMUSP00000030248.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000030248Re-query CCDS DB by Protein ID:ENSMUSP00000030248
Original member Current member EBI ENSMUST00000116317.8 ENSMUSP00000112019.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000116317.8Link to Ensembl Protein Viewer:ENSMUSP00000112019.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000116317Re-query CCDS DB by Protein ID:ENSMUSP00000112019
Original member Current member EBI ENSMUST00000169211.2 ENSMUSP00000128228.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169211.2Link to Ensembl Protein Viewer:ENSMUSP00000128228.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000169211Re-query CCDS DB by Protein ID:ENSMUSP00000128228
Original member NCBI NM_001163767.1 NP_001157239.1 Updated not alive Link to Nucleotide Sequence:NM_001163767.1Link to Protein Sequence:NP_001157239.1Re-query CCDS DB by Nucleotide ID:NM_001163767Re-query CCDS DB by Protein ID:NP_001157239
Current member NCBI NM_001163767.2 NP_001157239.1 Accepted alive Link to Nucleotide Sequence:NM_001163767.2Link to Protein Sequence:NP_001157239.1Re-query CCDS DB by Nucleotide ID:NM_001163767Re-query CCDS DB by Protein ID:NP_001157239Link to BLAST:NP_001157239.1
Original member NCBI NM_026100.3 NP_080376.1 Updated not alive Link to Nucleotide Sequence:NM_026100.3Link to Protein Sequence:NP_080376.1Re-query CCDS DB by Nucleotide ID:NM_026100Re-query CCDS DB by Protein ID:NP_080376
Current member NCBI NM_026100.4 NP_080376.1 Accepted alive Link to Nucleotide Sequence:NM_026100.4Link to Protein Sequence:NP_080376.1Re-query CCDS DB by Nucleotide ID:NM_026100Re-query CCDS DB by Protein ID:NP_080376Link to BLAST:NP_080376.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157239.1 173 Q9D5I4 173 100% 0 0
NP_080376.1 173 Q9D5I4 173 100% 0 0

Chromosomal Locations for CCDS 18405.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 102988573 102988673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102992495 102992586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 103002458 103002582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 103004141 103004344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (522 nt):
ATGGCACAGACACATGGGAGCAAGCAGCAGGCACAGCGGCTGGAGCAGGGTGCTGAAAGCTTACGTCATG
GAGCACAGGCACAGAGCAGAGAGAACAACGTTTCCCTCAGTACCGTGTCCCACGCGGATGAGCCCAGCCA
GCGTGATGAATCCTCTCGCCTCACAGTCCGGATGGAAAACACCTACCAGTTAGGTCCCACCAAACCTTTC
CCCGTGGCCACTGTCAATCATATTTTGGAAGATGTACTAACTACCTACCTACAAGAAGCACAATATGACC
CAGAGTTCTGCAGACAAATGACTAAAACAATTTCTGAGGTTATTAAGACCCAGGTCAAGGAATTAGTGAT
TCCGAGATATAAACTAATTGTCATCGTTTACATCGGACAGCGGGATGACCAGAGCATAGTTATTGGCAGC
AGATGCCTCTGGAATCCTAAAAGTGATACTGTCTCGTCCTATACTTTCAAAAATTCTACATTCTTTGCAC
TTGCAAATGTCTATGCAGTTTACTTCGAGTGA

Translation (173 aa):
MAQTHGSKQQAQRLEQGAESLRHGAQAQSRENNVSLSTVSHADEPSQRDESSRLTVRMENTYQLGPTKPF
PVATVNHILEDVLTTYLQEAQYDPEFCRQMTKTISEVIKTQVKELVIPRYKLIVIVYIGQRDDQSIVIGS
RCLWNPKSDTVSSYTFKNSTFFALANVYAVYFE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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