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Report for CCDS18321.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18321.1 Public Mus musculus 4 Ifna9 23 108 98 CCDS HistoryNCBI Gene:15972Re-query CCDS DB by CCDS ID:18321.1Re-query CCDS DB by GeneID:15972See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 18321.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102807.1 ENSMUSP00000099871.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102807.1Link to Ensembl Protein Viewer:ENSMUSP00000099871.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102807Re-query CCDS DB by Protein ID:ENSMUSP00000099871
Original member Current member NCBI NM_010507.1 NP_034637.1 Accepted alive Link to Nucleotide Sequence:NM_010507.1Link to Protein Sequence:NP_034637.1Re-query CCDS DB by Nucleotide ID:NM_010507Re-query CCDS DB by Protein ID:NP_034637Link to BLAST:NP_034637.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034637.1 190 P09235 190 100% 0 0

Chromosomal Locations for CCDS 18321.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 88591813 88592385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (573 nt):
ATGGCTAGGCCCTTTGCTTTCCTGATGGTCTTGGTGGTGATAAGCTACTGGTCAACCTGCTCTCTAGGAT
GTGACCTGCCTCAAACTCATAACCTCAGGAACAAGAAAATCTTGACACTCCTGGCACAAATGAGGAGACT
CTCCCCTCTCTCTTGCCTGAAGGACAGAAAGGACTTTGGATTCCCCCAGGAGAAGGTGGATGCCCAGCAG
ATCCAGGAGGCTCAAGCCATCCCTGTCCTGAGTGAGCTGACCCAGCAGATCCTGACCCTCTTCACATCAA
AGGACTCATCTGCTGCTTGGAATGCAACCCTCCTAGACTCATTCTGCACTGGCCTCCACCAGCTGCTCAA
TGACCTGCAAGGCTGTCTGATGCAGCTGGTCGGGATGAAGGAACTGCCCCTGACCCAGGAAGACTCCCAG
CTGGCTATGAAGAAATATTTCCACAGGATCACTGTGTACCTGAGAGAGAAGAAACACAGCCCCTGTGCCT
GGGAGGTGGTCAGAGCAGAAGTCTGGAGAGCCCTGTCTTCCTCAGTTAACTTGCTGGCAAGACTGAGTGA
GGAGAAGGAGTGA

Translation (190 aa):
MARPFAFLMVLVVISYWSTCSLGCDLPQTHNLRNKKILTLLAQMRRLSPLSCLKDRKDFGFPQEKVDAQQ
IQEAQAIPVLSELTQQILTLFTSKDSSAAWNATLLDSFCTGLHQLLNDLQGCLMQLVGMKELPLTQEDSQ
LAMKKYFHRITVYLREKKHSPCAWEVVRAEVWRALSSSVNLLARLSEEKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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