NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS18269.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18269.1 Public Mus musculus 4 Astn2 23 108 98 CCDS HistoryNCBI Gene:56079Re-query CCDS DB by CCDS ID:18269.1Re-query CCDS DB by GeneID:56079See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18269.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068214.10 ENSMUSP00000065786.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068214.10Link to Ensembl Protein Viewer:ENSMUSP00000065786.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000068214Re-query CCDS DB by Protein ID:ENSMUSP00000065786
Original member Current member NCBI NM_207109.2 NP_996992.1 Accepted alive Link to Nucleotide Sequence:NM_207109.2Link to Protein Sequence:NP_996992.1Re-query CCDS DB by Nucleotide ID:NM_207109Re-query CCDS DB by Protein ID:NP_996992Link to BLAST:NP_996992.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_996992.1 1352 Q80Z10-1 1352 100% 0 0

Chromosomal Locations for CCDS 18269.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 65381452 65381689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 65395071 65395254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 65396958 65397058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 65435152 65435293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 65540939 65541087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 65542651 65542784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 65581540 65581805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 65644698 65644877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 65648255 65648359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 65651863 65651987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 65729321 65729509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 65746299 65746465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 65794479 65794629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 65911660 65911797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 65912561 65912635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 65913713 65913797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 65950127 65950294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 65992288 65992434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 66059130 66059237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 66119057 66119212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 66185124 66185508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 66266193 66266380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 66403883 66404360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4059 nt):
ATGGCCGCCGCCGGCGCCCGGCGCAGCCCGGGCCGCGGCTTGGGGCTTCGGGGGCGGCCGAGGCTCGGCT
TCCACCCGGGGCCGCCGCCGCCACCGCCGCCGCCGCTGCTGTTGCTGTTTCTGCTCCTGCTGCCGCCGCC
GCCGTTGCTGGCCGGCGCCACGGCCGCCGCCGCCTCGCGGGAGCCCGACAGCCCATGCCGGCTCAAGACC
GTCACCGTATCCACGCTGCCCGCTCTGCGGGAAAGCGACATCGGCTGGAGCGGTGCCCGCACCGGGGCCG
CGGCCGGGGCTGGGGCCGGGACCGGAGCCGGGGCCGGAGCTGCTGCTGCTGCCGCCTCCGCCGCGTCCCC
GGGCTCCGCGGGTTCAGCCGGCACAGCCGCGGAGTCTCGTCTCCTTCTCTTTGTGCGTAATGAGCTCCCC
GGGCGCATCGCGGTACAAGATGACCTGGACAACACTGAGCTGCCCTTCTTCACCCTGGAGATGTCTGGCA
CAGCAGCGGACATTTCTTTGGTTCACTGGAGGCAGCAGTGGCTGGAGAATGGCACATTGTACTTCCACGT
TTCCATGAGCAGCTCTGGGCAACTGGCTCAGGCCACTGCTCCCACACTCCAGGAGCCCTCGGAGATCGTT
GAGGAACAGATGCATATCCTCCACATTTCTGTGATGGGTGGACTCATTGCACTTCTCCTCCTGCTGTTGG
TGTTCACAGTGGCACTGTATGCCCAGCGACGCTGGCAGAAGCGCCGGCGCATCCCACAGAAGAGCGCAAG
TACAGAAGCTACTCATGAGATTCACTACATCCCATCAGTGCTGCTGGGTCCTCAGGCCAGGGAAAGCTTC
CGATCCTCCAGACTTCAGACACACAACTCAGTCATTGGTGTGCCTATCCGGGAAACCCCCATCCTGGATG
ACTATGACTATGAAGAGGAGGAGGAACCACCCAGGCGAGCCAACCACGTCTCCCGTGAGGATGAGTTTGG
TAGCCAGATGACCCATGCCCTGGACAGCTTGGGAAGGCCAGGAGAAGAGAAAGTGGAATTTGAGAAGAAA
GCAGCAGCTGAGGCGACACAGGAAACAGTGGAGTCCCTGATGCAGAAGTTCAAGGAGAGTTTCCGTGCTA
ACACACCAGTGGAGATCGGTCAGTTGCAGCCAGCCTCGCGCAGCAGCACCTCTGCAGGGAAGAGGAAGCG
GAGGAACAAATCTCGAGGGGGAATCAGCTTTGGGAGAACCAAGGGGACATCAGGCTCAGAAGCAGATGAC
GAAACACAGCTGACCTTCTACACAGAGCAGTACCGCAGTCGCCGCCGCAGCAAAGGTTTACTGAAAAGCC
CTGTGAATAAGACAGCCTTAACACTGATTGCTGTGAGCTCCTGCATCTTGGCCATGGTGTGTGGCAACCA
GATGTCCTGTCCACTTACTGTGAAGGTGACTTTGCATGTGCCTGAACACTTCATTGCAGATGGGAGCAGC
TTTGTGGTGAGTGAAGGAAGCTACCTGGATATCTCCGATTGGCTAAACCCTGCCAAGCTGTCTCTGTATT
ACCAGATCAATGCCACCTCGCCATGGGTGAGAGACCTCTGTGGACAGAGGACGACAGATGCCTGTGAACA
GCTCTGTGACCCAGATACTGGGGAGTGCAGTTGTCATGAAGGTTACGCCCCTGACCCAGTCCACAGACAT
CTATGTGTTCGCAGTGACTGGGGTCAAAGTGAAGGACCTTGGCCTTACACAACACTGGAGAGGGGCTATG
ATCTGGTGACAGGAGAGCAAGCCCCTGAAAAGATTCTCAGGTCTACTTTCAGCTTGGGCCAAGGCCTCTG
GCTTCCGGTCAGCAAAAGCTTTGTGGTGCCACCGGTGGAGCTGTCCATCAACCCCCTGGCCAGCTGCAAG
ACGGATGTGCTCGTCACAGAAGACCCTGCGGATGTCAGGGAAGAAGCAATGTTGTCCACGTACTTTGAAA
CCATCAACGACCTGCTGTCCTCCTTTGGTCCAGTCCGTGACTGCTCAAGGAACAACGGGGGCTGTACCCG
TAACTTCAAGTGTGTGTCTGACCGCCAGGTGGACTCCTCGGGATGTGTGTGTCCTGAGGAACTGAAGCCC
ATGAAGGATGGCTCTGGCTGCTATGATCACTCCAAGGGCATCGACTGCTCTGATGGCTTTAATGGAGGGT
GTGAGCAGCTTTGCCTACAACAAACACTGCCTTTGCCCTATGATACCACCTCCAGCACCATCTTCATGTT
CTGCGGCTGTGTGGAAGAGTACAAGCTGGCTCCTGATGGGAAATCCTGTCTAATGCTCTCAGATGTCTGT
GAGGGCCCCAAGTGCCTCAAACCTGACTCCAAATTCAATGACACCCTCTTTGGAGAGATGCTACATGGTT
ACAACAACCGGACACAACATGTAAACCAAGGCCAAGTCTTCCAAATGACATTCAGGGAGAATAACTTCAT
CAAGGACTTTCCACAGCTGGCAGATGGGCTGTTGGTGATCCCGCTGCCAGTGGAAGAGCAATGCCGGGGG
GTTCTCTCTGAGCCCCTTCCAGACCTTCAGCTTCTCACAGGAGACATCAGGTATGATGAGGCCATGGGGT
ACCCCATGGTGCAACAGTGGCGTGTCCGGAGCAATCTCTATCGTGTGAAGCTGAGTACTATCACCCTCTC
AGCAGGCTTCACCAATGTCCTAAAGATCCTGACCAAAGAGAGCAGTCGGGATGAGCTGCTGTCCTTCATC
CAGCACTATGGCTCCCACTACATTGCCGAGGCTTTATACGGTTCTGAGCTCACCTGCATCATCCATTTTC
CCAGCAAGAAGGTCCAGCAGCAGCTATGGCTCCAATATCAGAAAGAGACCACGGAGCTGGGCAGCAAGAA
GGAGCTCAAGTCCATGCCCTTCATCACCTACCTCTCCGGTCTCCTGACAGCCCAGATGCTATCAGATGAC
CAGCTCATCTCAGGTGTGGAGATTCGATGTGAGGAGAAGGGCCGCTGTCCATCTACCTGTCACCTTTGCC
GCCGGCCAGGCAAAGAGCAGCTGAGCCCCACACCAGTGCTGCTGGAGATAAACCGTGTGGTTCCACTTTA
TACCCTCATCCAAGACAATGGCACAAAGGAGGCCTTCAAGAATGCACTGATGAGTTCTTACTGGTGTTCT
GGTAAAGGAGATGTGATTGATGACTGGTGCAGGTGTGACCTCAGTGCCTTTGATGCCAGTGGGCTTCCAA
ATTGTAGCCCCCTTCCACAGCCGGTGTTACGACTTTCTCCAACAGTGGAGCCTTCCAGCACTGTGGTTTC
CCTGGAGTGGGTAGATGTTCAGCCAGCCATTGGAACCAAAGTCTCTGACTATATTCTGCAGCACAAGAAA
GTGGATGAATACACAGACACGGACCTATACACAGGAGAATTCCTGAGTTTTGCCGATGACTTACTTTCTG
GCCTGGGTACATCTTGTGTAGCAGCTGGTCGAAGCCATGGAGAGGTTCCTGAAGTCAGTATCTACTCGGT
GATCTTCAAGTGCCTGGAGCCAGATGGTCTTTACAAGTTCACTCTGTATGCTGTGGATACTCGAGGGAGG
CACTCAGAGCTCAGCACAGTGACTCTAAGGACAGCTTGTCCACTGGTAGATGACAACAAAGCAGAAGAGA
TAGCGGACAAGATTTACAATCTATACAATGGTTACACAAGTGGCAAGGAGCAGCAGACTGCTTACAACAC
ACTGATGGAAGTCTCCGCCTCCATGCTCTTCCGTGTCCAGCACCACTACAACTCTCACTATGAAAAGTTT
GGTGACTTCGTCTGGAGGAGTGAGGATGAGCTAGGACCAAGGAAGGCTCATCTGATTCTGCGGCGGCTGG
AGCGGGTCAGCAGCCACTGTTCTAGTCTCTTGAGAAGCGCCTACATCCAGAGTCGTGTGGACACCATACC
CTATCTCTTCTGCCGCAGTGAGGAGGTCCGGCCTGCAGGAATGGTGTGGTACAGCATCCTCAAAGACACC
AAAATCACATGTGAGGAGAAGATGGTGTCTATGGCCCGAAACACGTACGGGGAAACCAAAGGCCGGTGA

Translation (1352 aa):
MAAAGARRSPGRGLGLRGRPRLGFHPGPPPPPPPPLLLLFLLLLPPPPLLAGATAAAASREPDSPCRLKT
VTVSTLPALRESDIGWSGARTGAAAGAGAGTGAGAGAAAAAASAASPGSAGSAGTAAESRLLLFVRNELP
GRIAVQDDLDNTELPFFTLEMSGTAADISLVHWRQQWLENGTLYFHVSMSSSGQLAQATAPTLQEPSEIV
EEQMHILHISVMGGLIALLLLLLVFTVALYAQRRWQKRRRIPQKSASTEATHEIHYIPSVLLGPQARESF
RSSRLQTHNSVIGVPIRETPILDDYDYEEEEEPPRRANHVSREDEFGSQMTHALDSLGRPGEEKVEFEKK
AAAEATQETVESLMQKFKESFRANTPVEIGQLQPASRSSTSAGKRKRRNKSRGGISFGRTKGTSGSEADD
ETQLTFYTEQYRSRRRSKGLLKSPVNKTALTLIAVSSCILAMVCGNQMSCPLTVKVTLHVPEHFIADGSS
FVVSEGSYLDISDWLNPAKLSLYYQINATSPWVRDLCGQRTTDACEQLCDPDTGECSCHEGYAPDPVHRH
LCVRSDWGQSEGPWPYTTLERGYDLVTGEQAPEKILRSTFSLGQGLWLPVSKSFVVPPVELSINPLASCK
TDVLVTEDPADVREEAMLSTYFETINDLLSSFGPVRDCSRNNGGCTRNFKCVSDRQVDSSGCVCPEELKP
MKDGSGCYDHSKGIDCSDGFNGGCEQLCLQQTLPLPYDTTSSTIFMFCGCVEEYKLAPDGKSCLMLSDVC
EGPKCLKPDSKFNDTLFGEMLHGYNNRTQHVNQGQVFQMTFRENNFIKDFPQLADGLLVIPLPVEEQCRG
VLSEPLPDLQLLTGDIRYDEAMGYPMVQQWRVRSNLYRVKLSTITLSAGFTNVLKILTKESSRDELLSFI
QHYGSHYIAEALYGSELTCIIHFPSKKVQQQLWLQYQKETTELGSKKELKSMPFITYLSGLLTAQMLSDD
QLISGVEIRCEEKGRCPSTCHLCRRPGKEQLSPTPVLLEINRVVPLYTLIQDNGTKEAFKNALMSSYWCS
GKGDVIDDWCRCDLSAFDASGLPNCSPLPQPVLRLSPTVEPSSTVVSLEWVDVQPAIGTKVSDYILQHKK
VDEYTDTDLYTGEFLSFADDLLSGLGTSCVAAGRSHGEVPEVSIYSVIFKCLEPDGLYKFTLYAVDTRGR
HSELSTVTLRTACPLVDDNKAEEIADKIYNLYNGYTSGKEQQTAYNTLMEVSASMLFRVQHHYNSHYEKF
GDFVWRSEDELGPRKAHLILRRLERVSSHCSSLLRSAYIQSRVDTIPYLFCRSEEVRPAGMVWYSILKDT
KITCEEKMVSMARNTYGETKGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH