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Report for CCDS18246.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18246.1 Public Mus musculus 4 Rgs3 23 108 98 CCDS HistoryNCBI Gene:50780Re-query CCDS DB by CCDS ID:18246.1Re-query CCDS DB by GeneID:50780See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18246.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065870.13 ENSMUSP00000065447.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065870.13Link to Ensembl Protein Viewer:ENSMUSP00000065447.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000065870Re-query CCDS DB by Protein ID:ENSMUSP00000065447
Original member NCBI NM_019492.3 NP_062365.2 Updated not alive Link to Nucleotide Sequence:NM_019492.3Link to Protein Sequence:NP_062365.2Re-query CCDS DB by Nucleotide ID:NM_019492Re-query CCDS DB by Protein ID:NP_062365
Current member NCBI NM_019492.4 NP_062365.2 Accepted alive Link to Nucleotide Sequence:NM_019492.4Link to Protein Sequence:NP_062365.2Re-query CCDS DB by Nucleotide ID:NM_019492Re-query CCDS DB by Protein ID:NP_062365Link to BLAST:NP_062365.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062365.2 610 Q9DC04-5 610 99.8361% 0 1

Chromosomal Locations for CCDS 18246.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 62581928 62582030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62602921 62602971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62605488 62605546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62606507 62606601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62607609 62607677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62615301 62615361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62616474 62616564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62617075 62617130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62623845 62623926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62625097 62625202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62625742 62626093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62626492 62626531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62631124 62631320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62634446 62634529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62640717 62640828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62646684 62646727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62652714 62652836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62657103 62657210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1833 nt):
ATGGAGAGGCCACATCAGGATGCTTCCTTGTCCAAAAAAGATGCCTGCACCCAGACTTACCCACCTAGGA
GGAGGATCAGGCATGCCCAAGTGCAGGATGCAGGTCAACTGAAGCTGTCCATTGATGCCCAGGATCGGGT
TCTGCTGCTGCACATCATAGAAGGCAAAGGCCTGATGAGCAGGGAGCCTGGCATCTGCGATCCCTATGTG
AAGGTTTCTTTGATCCCAGAAGACAGCCAGCTCCCCTGCCAGACCACACAGATCATTCCAGACTGCCGAG
ACCCAGCTTTCCACGAGCACTTCTTCTTTCCTGTCCCAGAGGAGGGTGATCAGAAGCGTCTTCTGGTGAC
AGTGTGGAACCGGGCCAGTGAGACCAGGCAGCATACGCTTATTGGCTGCATGAGCTTTGGGGTGAGGTCT
CTCTTGACTCCGGACAAGGAGATCAGTGGCTGGTACTATCTGCTAGGGGAGGACCTGGGTCGGACCAAGC
ACCTCAAGGTGGCTAGGCGGCGGCTCCAGCCCCTGAGAGACATGCTGTTGAGAATGCCAGGAGAGGGGGA
CCCTGAGAACGGGGAGAAACTCCAGATCACCATCCGGAGGGGCAAAGACGGCTTTGGCTTCACCATCTGC
TGTGACTCTCCGGTCCGAGTCCAGGCTGTGGATTCTGGGGGCCCGGCAGAGAGGGCGGGACTGCAGCAGC
TGGACACAGTGCTACAACTGAATGAGAGACCCGTGGAGCACTGGAAATGTGTGGAGCTGGCACATGAGAT
CCGGAGCTGTCCTAGCGAGATCATCCTGCTCGTGTGGCGTGTGGTCCCCCAGATCAAGCCGGGGCCAGAT
GGCGGAGTCTTGCGGCGGGCCTCCTGCAAGTCCACACATGACCTCCTGTCACCCCCTAACAAGAGGGAGA
AGAACTGTACTCATGGGGCCCCAGTTCGTCCTGAGCAGCGCCACAGCTGCCACCTGGTGTGTGACAGCTC
TGATGGTCTACTGCTTGGTGGCTGGGAGCGCTACACTGAGGTGGGCAAGCGCAGTGGCCAGCACACCCTG
CCTGCACTGTCCCGGACCACCACCCCTACTGACCCCAACTACATCATCCTGGCCCCACTGAATCCTGGAA
GCCAGTTGCTGCGGCCTGTGTACCAGGAGGATACAATCCCTGAAGAACCGGGGACTACTACTAAAGGGAA
ATCGTACACCGGCCTGGGCAAGAAGTCTCGGCTCATGAAGACAGTGCAGACCATGAAGGGCCACAGTAAC
TACCAAGACTGCTCAGCCCTGAGACCGCACATCCCGCATTCCAGTTACGGCACCTATGTCACCCTGGCCC
CTAAAGTCCTGGTGTTCCCTGTCTTTGTGCAGCCCCTAGATCTCTGTAACCCTGCCCGGACTCTCCTGCT
GTCGGAGGAGCTGCTGCTGTATGAGGGGAGGAACAAGACTTCCCAGGTGACACTGTTTGCCTACTCGGAC
CTGCTGCTGTTCACTAAGGAGGAGGAGCCAGGCCGCTGCGACGTCCTGAGAAATCCCCTCTACCTCCAGA
GCGTGAAGCTACAGGAGGGCTCTTCAGAAGACTTGAAATTCTGTGTGCTGTACCTGGCAGAGAAGGCAGA
GTGCTTATTCACTTTGGAGGCACACTCGCAGGAGCAGAAGAAGAGAGTGTGCTGGTGCCTGTCGGAGAAC
ATCGCCAAGCAGCAACAGCTGGCCGCACCACCTACAGAGAGGAAGAAACTTCACCCTTACGGCTCTCTCC
AGCAGGAGATGGGGCCAGTCACCTCCATCAGTGCCACCCAGGATAGAAGCTTTACCTCATCAGGACAGAC
CCTGATTGGCTGA

Translation (610 aa):
MERPHQDASLSKKDACTQTYPPRRRIRHAQVQDAGQLKLSIDAQDRVLLLHIIEGKGLMSREPGICDPYV
KVSLIPEDSQLPCQTTQIIPDCRDPAFHEHFFFPVPEEGDQKRLLVTVWNRASETRQHTLIGCMSFGVRS
LLTPDKEISGWYYLLGEDLGRTKHLKVARRRLQPLRDMLLRMPGEGDPENGEKLQITIRRGKDGFGFTIC
CDSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRVVPQIKPGPD
GGVLRRASCKSTHDLLSPPNKREKNCTHGAPVRPEQRHSCHLVCDSSDGLLLGGWERYTEVGKRSGQHTL
PALSRTTTPTDPNYIILAPLNPGSQLLRPVYQEDTIPEEPGTTTKGKSYTGLGKKSRLMKTVQTMKGHSN
YQDCSALRPHIPHSSYGTYVTLAPKVLVFPVFVQPLDLCNPARTLLLSEELLLYEGRNKTSQVTLFAYSD
LLLFTKEEEPGRCDVLRNPLYLQSVKLQEGSSEDLKFCVLYLAEKAECLFTLEAHSQEQKKRVCWCLSEN
IAKQQQLAAPPTERKKLHPYGSLQQEMGPVTSISATQDRSFTSSGQTLIG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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