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Report for CCDS18243.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18243.1 Public Mus musculus 4 Alad 23 108 98 CCDS HistoryNCBI Gene:17025Re-query CCDS DB by CCDS ID:18243.1Re-query CCDS DB by GeneID:17025See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18243.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030090.3 ENSMUSP00000030090.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030090.3Link to Ensembl Protein Viewer:ENSMUSP00000030090.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000030090Re-query CCDS DB by Protein ID:ENSMUSP00000030090
Original member Current member EBI ENSMUST00000107444.7 ENSMUSP00000103068.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107444.7Link to Ensembl Protein Viewer:ENSMUSP00000103068.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107444Re-query CCDS DB by Protein ID:ENSMUSP00000103068
Original member NCBI NM_001276446.1 NP_001263375.1 Updated not alive Link to Nucleotide Sequence:NM_001276446.1Link to Protein Sequence:NP_001263375.1Re-query CCDS DB by Nucleotide ID:NM_001276446Re-query CCDS DB by Protein ID:NP_001263375
NCBI NM_001276446.2 NP_001263375.1 Updated not alive Link to Nucleotide Sequence:NM_001276446.2Link to Protein Sequence:NP_001263375.1Re-query CCDS DB by Nucleotide ID:NM_001276446Re-query CCDS DB by Protein ID:NP_001263375
Current member NCBI NM_001276446.3 NP_001263375.1 Accepted alive Link to Nucleotide Sequence:NM_001276446.3Link to Protein Sequence:NP_001263375.1Re-query CCDS DB by Nucleotide ID:NM_001276446Re-query CCDS DB by Protein ID:NP_001263375Link to BLAST:NP_001263375.1
Original member NCBI NM_008525.4 NP_032551.3 Updated not alive Link to Nucleotide Sequence:NM_008525.4Link to Protein Sequence:NP_032551.3Re-query CCDS DB by Nucleotide ID:NM_008525Re-query CCDS DB by Protein ID:NP_032551
NCBI NM_008525.5 NP_032551.3 Updated not alive Link to Nucleotide Sequence:NM_008525.5Link to Protein Sequence:NP_032551.3Re-query CCDS DB by Nucleotide ID:NM_008525Re-query CCDS DB by Protein ID:NP_032551
Current member NCBI NM_008525.6 NP_032551.3 Accepted alive Link to Nucleotide Sequence:NM_008525.6Link to Protein Sequence:NP_032551.3Re-query CCDS DB by Nucleotide ID:NM_008525Re-query CCDS DB by Protein ID:NP_032551Link to BLAST:NP_032551.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001263375.1 330 P10518 330 100% 0 0
NP_032551.3 330 P10518 330 100% 0 0

Chromosomal Locations for CCDS 18243.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 62509249 62509310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62510105 62510234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62510515 62510601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62510694 62510781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62510868 62510923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62511524 62511612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62511702 62511785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62511887 62512022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62512871 62512967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62513532 62513582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62514074 62514186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (993 nt):
ATGCACCACCAGTCTGTTCTGCACAGCGGCTACTTTCACCCACTGCTTCGGAGCTGGCAGACTGCTGCCT
CCACCGTCAGTGCCTCCAACCTCATCTATCCCATCTTTGTCACGGATGTTCCTGATGATGTCCAGCCTAT
CGCCAGCCTCCCAGGAGTGGCCAGGTATGGCGTAAACCAGCTAGAAGAGATGCTGAGACCTCTGGTGGAA
GCTGGCCTGCGCTGTGTCCTGATCTTTGGCGTCCCCAGCAGAGTTCCCAAGGATGAACAGGGCTCTGCAG
CTGACTCTGAGGACTCCCCAACTATTGAGGCTGTCCGTCTGCTGAGGAAGACCTTCCCTTCCCTCCTAGT
GGCCTGTGACGTCTGCTTGTGCCCCTACACCTCCCATGGCCACTGTGGCCTCCTGAGTGAAAATGGAGCA
TTCCTAGCAGAGGAGAGCCGACAGCGGTTGGCAGAGGTGGCACTGGCCTATGCCAAGGCAGGCTGTCAGG
TTGTAGCTCCGTCAGACATGATGGACGGACGAGTTGAGGCCATCAAGGCTGCCCTGCTAAAACATGGACT
TGGCAACAGGGTCTCTGTGATGAGCTATAGTGCCAAATTTGCCTCCTGTTTCTACGGTCCTTTCCGGGAT
GCAGCTCAGTCAAGCCCAGCTTTTGGAGACCGACGCTGTTATCAGCTGCCTCCTGGTGCCCGTGGCCTGG
CCCTCCGAGCAGTGGCCCGAGACATTCAAGAAGGAGCTGACATGCTCATGGTGAAGCCGGGATTGCCCTA
CCTGGACATGGTGCGAGAGGTGAAGGACAAGCACCCCGAGCTCCCCCTCGCAGTATACCAGGTGTCTGGA
GAGTTTGCCATGTTGTGGCACGGAGCCCAGGCCGGGGCCTTTGATCTCAGGACTGCTGTACTGGAGACCA
TGACGGCCTTCCGCAGAGCCGGTGCCGACATCATCATCACCTACTTTGCACCGCAGCTGTTGAAGTGGCT
GAAGGAAGAATGA

Translation (330 aa):
MHHQSVLHSGYFHPLLRSWQTAASTVSASNLIYPIFVTDVPDDVQPIASLPGVARYGVNQLEEMLRPLVE
AGLRCVLIFGVPSRVPKDEQGSAADSEDSPTIEAVRLLRKTFPSLLVACDVCLCPYTSHGHCGLLSENGA
FLAEESRQRLAEVALAYAKAGCQVVAPSDMMDGRVEAIKAALLKHGLGNRVSVMSYSAKFASCFYGPFRD
AAQSSPAFGDRRCYQLPPGARGLALRAVARDIQEGADMLMVKPGLPYLDMVREVKDKHPELPLAVYQVSG
EFAMLWHGAQAGAFDLRTAVLETMTAFRRAGADIIITYFAPQLLKWLKEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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