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Report for CCDS18221.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18221.1 Public Mus musculus 4 Ptbp3 23 108 98 CCDS HistoryNCBI Gene:230257Re-query CCDS DB by CCDS ID:18221.1Re-query CCDS DB by GeneID:230257See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18221.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030076.11 ENSMUSP00000030076.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030076.11Link to Ensembl Protein Viewer:ENSMUSP00000030076.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000030076Re-query CCDS DB by Protein ID:ENSMUSP00000030076
Original member NCBI NM_178164.3 NP_835458.1 Updated not alive Link to Nucleotide Sequence:NM_178164.3Link to Protein Sequence:NP_835458.1Re-query CCDS DB by Nucleotide ID:NM_178164Re-query CCDS DB by Protein ID:NP_835458
Current member NCBI NM_178164.4 NP_835458.1 Accepted alive Link to Nucleotide Sequence:NM_178164.4Link to Protein Sequence:NP_835458.1Re-query CCDS DB by Nucleotide ID:NM_178164Re-query CCDS DB by Protein ID:NP_835458Link to BLAST:NP_835458.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_835458.1 523 Q8BHD7-1 523 100% 0 0

Chromosomal Locations for CCDS 18221.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 59476883 59477015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 59477155 59477232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 59481362 59481578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 59482545 59482637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 59485339 59485372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 59485607 59485746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 59488111 59488188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 59493186 59493360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 59494500 59494610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 59501310 59501474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 59514274 59514420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 59517586 59517755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 59524395 59524425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1572 nt):
ATGAACAGCTCGACTTCTGCAGGTGTGTATGCTAATGGGAATGACAACAAGAAATTTAAAGGAGATAGAC
CTCCCTGTTCGCCTTCCCGTGTTCTCCATCTTCGAAAAATTCCATGTGATGTCACCGAAGCAGAGGTCAT
ATCATTAGGTCTACCATTTGGCAAAGTAACTAATCTTTTGATGTTGAAAGGAAAAAGCCAGGCCTTTTTA
GAAATGGCTTCTGAAGAAGCTGCTGTTACTATGATAAATTATTACACTCCTGTTACTCCTCATCTTCGAA
GTCAGCCTGTTTATATCCAGTATTCCAATCACCGAGAACTTAAGACTGACAATCTGCCTAATCAGGCTAG
AGCCCAAGCTGCACTGCAGGCTGTCAGTGCAGTCCAGTCAGGAAACTTGTCCCTTCCTGGAGCTACTGCA
AATGAAGGCACATTGCTACCTGGGCAGAGCCCTGTGCTCCGGATAATTATTGAAAACCTATTTTACCCTG
TCACTCTGGAAGTTCTCCATCAGATATTTTCTAAATTTGGCACGGTGTTGAAGATTATCACCTTTACAAA
GAATAATCAGTTTCAAGCCTTGCTTCAGTATGCCGACCCAGTGAATGCGCAGTATGCCAAAATGGCTCTG
GATGGCCAGAATATCTACAATGCGTGCTGCACTCTCCGTATTGACTTCTCCAAGCTCACCAGCCTTAATG
TGAAATACAATAATGACAAAAGCAGAGACTTCACTCGCTTAGACCTTCCTACTGGTGACGGCCAGCCATC
TCTTGAACCTCCTATGGCTGCTGCTTTTGGTGCACCGGGTATAATGTCCTCTCCATATGCAGGGGCTGCT
GGCTTTGCCCCAGCCATCGCATTTCCTCAAGCAGCAGGTCTGTCTGTCCCAGCTGTTCCCGGAGCCCTTG
GTCCTCTCACACTTACCTCCTCTGCTGTCAGTGGAAGGATGGCCATTCCTGGGGCAAGTGGTATGCCTGG
GAATTCTGTTCTGCTGGTCACCAACCTCAATCCTGACTTTATCACACCACATGGGCTTTTTATCCTATTT
GGAGTGTATGGTGATGTACATCGAGTGAAGATTATGTTTAACAAGAAAGAAAACGCCTTGGTGCAGATGG
CGGATGCGAGTCAAGCCCAGCTAGCAATGAACCACCTAAGTGGTCAGAGGCTCTATGGAAAAGTACTTCG
GGCTACACTGTCCAAACATCAAGCCGTCCAGCTCCCTAGAGAGGGACAGGAAGACCAAGGTCTGACCAAG
GACTTCAGCAATAGTCCCCTGCATCGCTTTAAAAAGCCCGGCTCAAAGAATTTCCAAAATATCTTCCCTC
CATCAGCCACACTTCATCTTTCCAACATTCCTCCTTCTGTCACAATGGATGACCTGAAGAACCTGTTCAC
AGAAGCTGGATGCTCAGTGAAGGCTTTTAAGTTCTTCCAGAAAGACCGTAAGATGGCTCTCATTCAGTTG
GGATCTGTGGAAGAAGCAATCCAGGCTCTTATTGAGCTTCACAATCATGACCTTGGAGAGAATCACCACC
TCAGAGTTTCCTTCTCAAAATCCACCATCTGA

Translation (523 aa):
MNSSTSAGVYANGNDNKKFKGDRPPCSPSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKGKSQAFL
EMASEEAAVTMINYYTPVTPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGNLSLPGATA
NEGTLLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAQYAKMAL
DGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSLEPPMAAAFGAPGIMSSPYAGAA
GFAPAIAFPQAAGLSVPAVPGALGPLTLTSSAVSGRMAIPGASGMPGNSVLLVTNLNPDFITPHGLFILF
GVYGDVHRVKIMFNKKENALVQMADASQAQLAMNHLSGQRLYGKVLRATLSKHQAVQLPREGQEDQGLTK
DFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTMDDLKNLFTEAGCSVKAFKFFQKDRKMALIQL
GSVEEAIQALIELHNHDLGENHHLRVSFSKSTI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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