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Report for CCDS18200.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18200.1 Public Mus musculus 4 Ctnnal1 23 108 98 CCDS HistoryNCBI Gene:54366Re-query CCDS DB by CCDS ID:18200.1Re-query CCDS DB by GeneID:54366See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18200.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045142.14 ENSMUSP00000036487.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045142.14Link to Ensembl Protein Viewer:ENSMUSP00000036487.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000045142Re-query CCDS DB by Protein ID:ENSMUSP00000036487
Original member Current member NCBI NM_018761.3 NP_061231.3 Accepted alive Link to Nucleotide Sequence:NM_018761.3Link to Protein Sequence:NP_061231.3Re-query CCDS DB by Nucleotide ID:NM_018761Re-query CCDS DB by Protein ID:NP_061231Link to BLAST:NP_061231.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061231.3 731 O88327 731 100% 0 0

Chromosomal Locations for CCDS 18200.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 56812329 56812388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56812511 56812594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56813178 56813291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56813830 56813886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56816181 56816229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56816989 56817143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56817247 56817297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56822518 56822555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56826274 56826424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56827252 56827344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56829484 56829642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56832906 56832992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56835178 56835378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56837732 56837902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56838966 56839055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56841561 56841680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56844447 56844634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56847810 56847999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56864977 56865114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2196 nt):
ATGGCCGCTTCTCCAGTCCCGGGCGGTGGCGGTGCGGGAGCTGTCCACTCCTCCAACGCGGCTGGCTTCA
CCTTCGACTCGGGACTGGAGATCAGGACGCGCTCGGTGGAACAGACTCTTCTGCCCCTGGTTTCTCAGAT
CACCACACTTATAAACCATAAAGATAATACCAAAAAGTCTGATAAAACCCTGCAAGCGATTCAGCGTGTG
GGACAAGCGGTCAACTTGGCAGTTGGAAGATTTGTTAAAGTAGGGGAAGCTATAGCCAACGAAAACTGGG
ATTTGAAAGAAGAAATTAACATCGCCTGCATCGAAGCCAAGCAAGCAGGTGAAACAATCGCCTCACTCAC
AGATGTGACTAAACGGAGCCATTTGGAATCAGATGGTCAGGTCACGATTCTGACAGACAAAACAGGCGTC
GTGCAGGCCGCCCGGCTGCTGCTCTCCTCAGTGACAAAAGTGCTGCTGCTGGCAGATCGTGTAGTCATCA
AGCAGATAGTGACATCGAGAAACAAGATTCTCGCAACCATGGAAAGGCTAGAGAAAGTAAACAGCTTTCA
GGAATTTGTTCAGATATTCAGCCAGTTTGGAAACGAAATGGTGGAGTTTGCACATCTAACGGGAGACCGA
CAAAATGATTTGAAAGATGAGAAGAAAAAGGCCAGAATGGCTGTGGCGAGGGCTGTGCTTGAAAAGGGTA
CGATGATGCTCCTTACAGCCTCAAAGACATGTCTCAGGCATCCCAGCTGTGAGTCAGCCCACACAAACAA
AGAAGGAGTGTTTGACCGGATGAGAGTGGCCCTGGAGAAGGTCACGGAGATCGTGACTGACTGCAGACTC
AGCGGAGAGACCGACAGCTCATCTGTCAGCATTTTTACTGGGATTAAAGAGTTGAAGGTGAATATTGAAG
CTCTTCGGGAGAATGTTTGCTTTGAGTCCAAAGAGAACCTTTCTGCCGCATTGGAGGCCGTCTTGGAGCA
TGTGGAGGACTTCACTGATTCTGCCTACACCAGCCACGAGCACAGGGAACGGATCTTGGAGCTGTCTTCT
CAGGCGAGGACAGAGCTGCAGCAGCTCCTTTCCGTGTGGATGCAAACCCAAAGCAGGAAGACAAAGAGCG
CCGCCGAGGAGCTGGAACTCACAGTTCTGAAGATCAGCCACAGCCTGGACGAGCTGAGGAGAGAACTCCA
TTGTACAGCCATGCAGCTGGCAGCCGACCTGTTAAAATTCCATGCTGATCATGTGGTTTTAAAAGCATTA
AAAGTTACTGGAGTAGAAGGAAATTTGGAAGCTTTGGCTGAGTATGCCTGTAAACTCTCTGAGCAGAAAG
AACAGCTTGTGGAGACATGTCGATTGTTGCGGCATATATCCGGCACAGAACCCCTTGAGATAACGTGCAT
ACATGCAGAGGAGACATTTCAGGTGACTGGCCAACAGATCATTTCTGCTGCTGAAACGTTGACGTTGCAT
CCGTCTAGCAAAATCGCTAAGGAAAACCTGGATGTGTTTTGTGAAGCTTGGGAGTCTCAGATGAGTGACA
TGGCGACGCTGCTAAGGGAAATCAGTGATGTGTTTGAAGGAAGACGAGGAGAGAGGTGCGACCATCTTTC
ACTTCCAAAGCCCACGAAGAATAGTGCAAACCTGAAGTCACTAAAGCCCGACAAACCTGACTCGGAGGAG
CAAGCCAAGATAGCAAAGCTCGGGCTGAAGCTGGGATTGCTCTCCTCTGATGCTGACTGTGAAATCGAGA
AATGGGAAGATGAAGAGAACGAGATCGTTCGGCATGGACGCAATATGTCCAGGATGGCCTATTCTCTGTA
TTTATTTACTAGAGGAGAGGGGCCACTGAAAACTTCCCAGGACTTAATTCACTTCCTAGAGGTTTTTGCT
GCAGAGGGATTAAAGCTTACTTCAAGTGTACAGTCATTTTCAAAACAGCTAAAAGATGATGACAAACTTA
TGCTTCTCCTGGAAATAAACAAACTTATTCCTCTATGCCACCAGCTTCAGACAATAACTAAGACATCTTT
GCAGAGTAAAGTCTTTCTAAAGGTTGACAAGTGTATTACAAAGATAAGATCCATGATGACTCTTGTGGTC
CAGCTCCTCTCACTTTGCTATAAACTACTGAAGAAGATGGAAAATAACAGATGGGGCTCTGCGACGAACA
AAGATACCATGGATGGTCAAAACTGA

Translation (731 aa):
MAASPVPGGGGAGAVHSSNAAGFTFDSGLEIRTRSVEQTLLPLVSQITTLINHKDNTKKSDKTLQAIQRV
GQAVNLAVGRFVKVGEAIANENWDLKEEINIACIEAKQAGETIASLTDVTKRSHLESDGQVTILTDKTGV
VQAARLLLSSVTKVLLLADRVVIKQIVTSRNKILATMERLEKVNSFQEFVQIFSQFGNEMVEFAHLTGDR
QNDLKDEKKKARMAVARAVLEKGTMMLLTASKTCLRHPSCESAHTNKEGVFDRMRVALEKVTEIVTDCRL
SGETDSSSVSIFTGIKELKVNIEALRENVCFESKENLSAALEAVLEHVEDFTDSAYTSHEHRERILELSS
QARTELQQLLSVWMQTQSRKTKSAAEELELTVLKISHSLDELRRELHCTAMQLAADLLKFHADHVVLKAL
KVTGVEGNLEALAEYACKLSEQKEQLVETCRLLRHISGTEPLEITCIHAEETFQVTGQQIISAAETLTLH
PSSKIAKENLDVFCEAWESQMSDMATLLREISDVFEGRRGERCDHLSLPKPTKNSANLKSLKPDKPDSEE
QAKIAKLGLKLGLLSSDADCEIEKWEDEENEIVRHGRNMSRMAYSLYLFTRGEGPLKTSQDLIHFLEVFA
AEGLKLTSSVQSFSKQLKDDDKLMLLLEINKLIPLCHQLQTITKTSLQSKVFLKVDKCITKIRSMMTLVV
QLLSLCYKLLKKMENNRWGSATNKDTMDGQN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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