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Report for CCDS18193.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18193.1 Public Mus musculus 4 Tmem38b 23 108 98 CCDS HistoryNCBI Gene:52076Re-query CCDS DB by CCDS ID:18193.1Re-query CCDS DB by GeneID:52076See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18193.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030127.12 ENSMUSP00000030127.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030127.12Link to Ensembl Protein Viewer:ENSMUSP00000030127.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000030127Re-query CCDS DB by Protein ID:ENSMUSP00000030127
Original member Current member NCBI NM_028053.2 NP_082329.1 Accepted alive Link to Nucleotide Sequence:NM_028053.2Link to Protein Sequence:NP_082329.1Re-query CCDS DB by Nucleotide ID:NM_028053Re-query CCDS DB by Protein ID:NP_082329Link to BLAST:NP_082329.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082329.1 292 Q9DAV9 292 100% 0 0

Chromosomal Locations for CCDS 18193.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 53826109 53826220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 53840627 53840783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 53848866 53849050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 53850474 53850561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 53854312 53854429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 53859882 53860100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (879 nt):
ATGGAGTACCCGTGGGATGATCTGACTCTGGCCTTTTCCCGCACGTCCATGTTTCCCTTTTTTGATATCG
CCCACTACCTGGTGTCGGTGATGGCGCTGAAGCAGCGGCCAGGAGCAGTGGCGGCGGCCTGGAATAACCC
CCTGGCTAGCTGGCTGAGTGCCATGCTCCATTGCTTTGGTGGAGGAATTTTATCCTGTATGCTGCTTGCA
GAGTCTCCATTGAAGTTTCTTACAAACCACACTAATATTTTACTGGCATCTTCAATCTGGTATATTGTAT
TCTTTTGCCCTCGTGACCTAGTTTCCCAGGGTTATTCATATCAACCTATTCAGTTCCTGGCTGCGGGAAT
GAAGGAAGTGACCCGGACGTGGAAAATAGTAGGCGGAGTCTCGGATGCTAATAGCTATTACAGAAATGCC
TGGATAGTCATGATAGTTGTTGGATGGGCCCGAGGTGCAGGTGGTGCTGTCGTCACAGCTTGTGAACAGT
TGTTAAAAGGAGACTGGAAACCAGAAGGTGATGAATGGCTGAAGATGTCCTTCCCTTGCAAGATAACCCT
GCTGGGGTCAATTATGTTCACCTTCCAGCACACCAGGCACCTGGCGATCTCAAAGCATGATCTCATGTTC
CTTTACACTATCTTCCTCGTGACCATAAAGGTAACCATGATGATGACAAAGGATACTGCTGTGACTCTCA
CTCCCTTTGAGGACACCCTGACTCGGATGCTTTTTGGCCGGCGGCAGCAGCAGCAGTTTTCATCGAGTGA
AAAGAAAACTGAAGTCAAACCGTCTTCCAATGGTTCTGCCTCAAGTGCATCGAAGCGGGGAGCAGAGCCT
TCGGGTGGTGCTAAGAGACACGCCAAGAAAGAAGACTGA

Translation (292 aa):
MEYPWDDLTLAFSRTSMFPFFDIAHYLVSVMALKQRPGAVAAAWNNPLASWLSAMLHCFGGGILSCMLLA
ESPLKFLTNHTNILLASSIWYIVFFCPRDLVSQGYSYQPIQFLAAGMKEVTRTWKIVGGVSDANSYYRNA
WIVMIVVGWARGAGGAVVTACEQLLKGDWKPEGDEWLKMSFPCKITLLGSIMFTFQHTRHLAISKHDLMF
LYTIFLVTIKVTMMMTKDTAVTLTPFEDTLTRMLFGRRQQQQFSSSEKKTEVKPSSNGSASSASKRGAEP
SGGAKRHAKKED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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