NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS18175.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18175.1 Public Mus musculus 4 Zfp189 23 108 98 CCDS HistoryNCBI Gene:230162Re-query CCDS DB by CCDS ID:18175.1Re-query CCDS DB by GeneID:230162See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18175.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042964.12 ENSMUSP00000036663.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042964.12Link to Ensembl Protein Viewer:ENSMUSP00000036663.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000042964Re-query CCDS DB by Protein ID:ENSMUSP00000036663
Original member Current member EBI ENSMUST00000107696.1 ENSMUSP00000103324.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107696.1Link to Ensembl Protein Viewer:ENSMUSP00000103324.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107696Re-query CCDS DB by Protein ID:ENSMUSP00000103324
Original member Current member NCBI NM_001289901.1 NP_001276830.1 Accepted alive Link to Nucleotide Sequence:NM_001289901.1Link to Protein Sequence:NP_001276830.1Re-query CCDS DB by Nucleotide ID:NM_001289901Re-query CCDS DB by Protein ID:NP_001276830Link to BLAST:NP_001276830.1
Original member Current member NCBI NM_145547.3 NP_663522.2 Accepted alive Link to Nucleotide Sequence:NM_145547.3Link to Protein Sequence:NP_663522.2Re-query CCDS DB by Nucleotide ID:NM_145547Re-query CCDS DB by Protein ID:NP_663522Link to BLAST:NP_663522.2

Chromosomal Locations for CCDS 18175.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 49521563 49521595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 49522398 49522482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 49529017 49530725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1827 nt):
ATGGCGTCCCCAAGCCCACCGCTGGAGCCAAAGGAGGAGTGGGGTTATCTGGATCCAGCTCCGAGAAGCC
TGTATAAAGATGTCATGATGGACAGCTACGGAAAGCTGGTCTCGCTGGATGTTTTAAACAGAAATAAAGA
TGAAGAGCCAACTGTGAAAGAAGAACTTGAGAAAGATATCGAGCCACAGGGTGTAATAGTTACAAGAATC
AAAAGTGAAATTGATCAAGATCCTGTGGGTAGCGAAACCTTTGAACTTGTTGGTAGGTTAGATAAACAAA
GAGGGATCTTTTTGTGGGAAATACCACGTGACTCTCTGAGTGAGGAACAGAAACTATTTAGAGGGCACAC
TAATGTCCGTAAGAGACCAACTTCAGAAGAGAAGTGTCATAAATGTGAAGAATGTGGAAAACGTTTTGTC
CGCAAGGCCCATTTCATTCAGCATCAAAGGGTCCACACGGGTGAGAAACCTTTTCAGTGCAACGAGTGTG
GGAAAAGCTTCAGTCGAAGTTCCTTTGTTATTGAACATCAGAGAATTCACACTGGGGAACGACCCTATGA
GTGTAATTACTGTGGGAAAACCTTTAGTGTGAGCTCTACCCTTATTAGACACCAGAGAATCCACACTGGA
GAAAGGCCTTACCAGTGTAATCAGTGTAAACAGAGCTTCAGCCAGAGAAGGAGCCTTGTGAAACACCAAA
GAATTCACACTGGTGAGAAACCCCATAAATGCAGTGACTGTGGAAAAGCCTTCAGTTGGAAATCCCACCT
TATTGAGCATCAGAGGACCCACACTGGTGAGAAACCCTATCACTGTACCAAATGCAAGAAAAGTTTTAGT
CGAAACTCATTGCTTGTTGAACACCAGAGAATTCATACCGGAGAAAGACCTCATAAGTGTGGTGAATGTG
GGAAAGCGTTCAGATTAAGTACATACCTTATACAACACCAAAAAATACACACTGGTGAGAAGCCTTTTCT
TTGTATTGAATGTGGAAAGAGTTTCAGTCGGAGCTCATTCCTTATTGAACATCAGAGGATCCATACGGGG
GAACGCCCTTATCAGTGCCAAGAGTGCGGGAAAAGTTTCAGTCAACTTTGCAACCTTACCCGTCATCAGA
GAATTCACACGGGGGACAAACCCCACAAGTGTGAGGAGTGTGGGAAAGCCTTCAGTAGAAGCTCAGGTCT
CATTCAGCACCAGAGAATCCATATCAGGGAAAAGACTTCGCCATTCAGTGAAACTAAGGAAAGTTTTGAT
CCAAACTGCAGTCTGGTTATACAGCAGGAAGTCTCCCCTAAGGAGAAATCGTACAAATGCGATGACTGTG
GGAAAACGTTCAGTGTCAGTGCTCATCTTGTACAGCATCAGAGGATCCACACTGGTGAGAAGCCCTACCT
GTGTACTGTCTGCGGGAAAAGCTTCAGTCGGAGCTCGTTTCTTATTGAGCATCAGAGAATCCACACTGGG
GAGAGACCCTATCTGTGCAGACAGTGTGGCAAAAGTTTTAGTCAACTTTGTAATCTCATCCGCCATCAGG
GCGTTCACACTGGTAACAAGCCCCACAAGTGTGAGGAGTGTGGGAAAGCCTTCAGCAGGAACTCAGGTCT
CATTCAGCACCAGAGAATCCACACAGGAGAGAAGCCTTATAGGTGTGGAAAATGTGACAAAAGTTTTAGT
CAACAGCGCAGCCTTGTCAACCATCAGAAGATCCATGCAGAGGTGAAAACCCAGGAAATTTATGAATGTG
ATGCCTGCGGCGAAGCCTTTACTTGTCAGATTTCTCTAATTCAGCATCAAAAGTTGCATATTATGTGGAT
GCAGTAA

Translation (608 aa):
MASPSPPLEPKEEWGYLDPAPRSLYKDVMMDSYGKLVSLDVLNRNKDEEPTVKEELEKDIEPQGVIVTRI
KSEIDQDPVGSETFELVGRLDKQRGIFLWEIPRDSLSEEQKLFRGHTNVRKRPTSEEKCHKCEECGKRFV
RKAHFIQHQRVHTGEKPFQCNECGKSFSRSSFVIEHQRIHTGERPYECNYCGKTFSVSSTLIRHQRIHTG
ERPYQCNQCKQSFSQRRSLVKHQRIHTGEKPHKCSDCGKAFSWKSHLIEHQRTHTGEKPYHCTKCKKSFS
RNSLLVEHQRIHTGERPHKCGECGKAFRLSTYLIQHQKIHTGEKPFLCIECGKSFSRSSFLIEHQRIHTG
ERPYQCQECGKSFSQLCNLTRHQRIHTGDKPHKCEECGKAFSRSSGLIQHQRIHIREKTSPFSETKESFD
PNCSLVIQQEVSPKEKSYKCDDCGKTFSVSAHLVQHQRIHTGEKPYLCTVCGKSFSRSSFLIEHQRIHTG
ERPYLCRQCGKSFSQLCNLIRHQGVHTGNKPHKCEECGKAFSRNSGLIQHQRIHTGEKPYRCGKCDKSFS
QQRSLVNHQKIHAEVKTQEIYECDACGEAFTCQISLIQHQKLHIMWMQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH