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Report for CCDS18160.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18160.1 Public Mus musculus 4 Tgfbr1 23 108 98 CCDS HistoryNCBI Gene:21812Re-query CCDS DB by CCDS ID:18160.1Re-query CCDS DB by GeneID:21812See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18160.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000007757.14 ENSMUSP00000007757.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000007757.14Link to Ensembl Protein Viewer:ENSMUSP00000007757.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000007757Re-query CCDS DB by Protein ID:ENSMUSP00000007757
Original member NCBI NM_009370.3 NP_033396.1 Updated not alive Link to Nucleotide Sequence:NM_009370.3Link to Protein Sequence:NP_033396.1Re-query CCDS DB by Nucleotide ID:NM_009370Re-query CCDS DB by Protein ID:NP_033396
Current member NCBI NM_009370.4 NP_033396.1 Accepted alive Link to Nucleotide Sequence:NM_009370.4Link to Protein Sequence:NP_033396.1Re-query CCDS DB by Nucleotide ID:NM_009370Re-query CCDS DB by Protein ID:NP_033396Link to BLAST:NP_033396.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033396.1 503 Q64729-1 503 100% 0 0

Chromosomal Locations for CCDS 18160.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 47353312 47353396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 47383749 47383994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 47393247 47393489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 47396355 47396585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 47402803 47402970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 47403370 47403526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 47405529 47405653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 47406922 47407052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 47410652 47410777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1512 nt):
ATGGAGGCGGCGGCCGCTGCTCCACGTCGTCCGCAGCTCCTCATCGTGTTGGTGGCGGCGGCGACGCTGC
TCCCGGGGGCGAAGGCATTACAGTGTTTCTGCCACCTCTGTACAAAGGATAATTTTACCTGTGAGACAGA
TGGTCTTTGCTTTGTCTCAGTCACTGAGACCACAGACAAAGTTATACACAATAGTATGTGTATAGCTGAA
ATTGACCTAATTCCTCGAGACAGGCCATTTGTATGTGCACCATCTTCAAAAACAGGGGCAGTTACTACAA
CATATTGCTGCAATCAGGACCACTGCAATAAAATAGAACTCCCAACTACAGGACCTTTTTCAGAAAAGCA
GTCAGCTGGCCTTGGTCCTGTGGAGCTGGCAGCTGTCATTGCTGGTCCAGTCTGCTTCGTCTGCATTGCA
CTTATGCTGATGGTCTATATCTGCCATAACCGCACTGTCATTCACCACCGTGTGCCAAATGAAGAGGATC
CATCACTAGATCGCCCTTTCATTTCAGAGGGCACCACCTTAAAAGATTTAATTTATGATATGACAACATC
AGGGTCTGGATCAGGTTTACCACTGCTTGTTCAAAGAACAATTGCCAGGACCATTGTGTTACAAGAAAGC
ATTGGCAAAGGTCGGTTTGGAGAAGTTTGGCGAGGCAAATGGCGGGGAGAAGAAGTTGCTGTGAAGATAT
TCTCTTCTAGAGAAGAGCGTTCATGGTTCCGAGAGGCAGAGATTTATCAGACTGTAATGTTACGCCATGA
AAATATCCTGGGATTTATAGCAGCAGACAACAAAGACAATGGGACATGGACGCAGCTGTGGTTGGTGTCA
GATTATCATGAGCATGGATCCCTTTTCGATTACTTGAATAGATACACTGTTACTGTGGAAGGAATGATCA
AGCTTGCTCTGTCCACAGCAAGTGGTCTTGCCCATCTTCACATGGAGATTGTTGGTACCCAAGGAAAACC
AGCTATTGCCCATAGAGATTTGAAATCAAAGAATATCTTGGTGAAGAAAAATGGAACCTGTTGTATTGCA
GACTTGGGACTTGCTGTGAGACATGATTCTGCCACAGATACAATTGATATTGCTCCAAACCACAGAGTAG
GCACTAAAAGGTACATGGCCCCTGAAGTTCTAGATGATTCCATAAATATGAAACATTTTGAATCCTTCAA
ACGCGCTGACATCTATGCAATGGGCTTAGTGTTCTGGGAAATTGCTCGACGCTGTTCTATTGGTGGAATC
CATGAAGACTATCAGTTGCCTTATTATGATCTTGTACCTTCTGATCCATCGGTTGAAGAAATGAGAAAAG
TAGTTTGCGAACAGAAGTTAAGGCCAAATATTCCAAACAGATGGCAGAGCTGTGAGGCCTTGAGAGTGAT
GGCTAAAATTATGAGAGAATGCTGGTATGCCAATGGAGCAGCAAGGCTGACAGCTTTGCGAATTAAAAAA
ACATTGTCACAACTCAGCCAACAGGAAGGCATCAAAATGTAA

Translation (503 aa):
MEAAAAAPRRPQLLIVLVAAATLLPGAKALQCFCHLCTKDNFTCETDGLCFVSVTETTDKVIHNSMCIAE
IDLIPRDRPFVCAPSSKTGAVTTTYCCNQDHCNKIELPTTGPFSEKQSAGLGPVELAAVIAGPVCFVCIA
LMLMVYICHNRTVIHHRVPNEEDPSLDRPFISEGTTLKDLIYDMTTSGSGSGLPLLVQRTIARTIVLQES
IGKGRFGEVWRGKWRGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS
DYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIA
DLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGI
HEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKK
TLSQLSQQEGIKM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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