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Report for CCDS18146.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18146.1 Public Mus musculus 4 Xpa 23 108 98 CCDS HistoryNCBI Gene:22590Re-query CCDS DB by CCDS ID:18146.1Re-query CCDS DB by GeneID:22590See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18146.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030013.11 ENSMUSP00000030013.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030013.11Link to Ensembl Protein Viewer:ENSMUSP00000030013.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000030013Re-query CCDS DB by Protein ID:ENSMUSP00000030013
Original member NCBI NM_011728.2 NP_035858.2 Updated not alive Link to Nucleotide Sequence:NM_011728.2Link to Protein Sequence:NP_035858.2Re-query CCDS DB by Nucleotide ID:NM_011728Re-query CCDS DB by Protein ID:NP_035858
Current member NCBI NM_011728.3 NP_035858.2 Accepted alive Link to Nucleotide Sequence:NM_011728.3Link to Protein Sequence:NP_035858.2Re-query CCDS DB by Nucleotide ID:NM_011728Re-query CCDS DB by Protein ID:NP_035858Link to BLAST:NP_035858.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035858.2 272 Q64267-1 272 100% 0 0

Chromosomal Locations for CCDS 18146.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 46175267 46175415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46183118 46183235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46184288 46184453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46185591 46185696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46193050 46193157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46196049 46196220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (819 nt):
ATGGCGACGGCCGAGGAAAAGCAGACGTCACCTGAGCCCGTGGCCGCGGACGAGCCCGCGCAGCTGCCGG
CCGCCGTACGCGCGAGCGTGGAGCGGAAGCGACAGCGGGCACTGATGCTGCGCCAGGCTCGGCTGGCTGC
GCGGCCCTACCCCGCGGCGGCGGCCACCGGAGGCGTGGCCAGTGTAAAAGCAGCTCCCAAAATGATTGAC
ACCAAAGGTGGCTTCATTTTAGAAGAGGAAGAAGAGAAACACGAGATTGGAAACATTGTTCATGAACCAG
GGCCCGTCATGGAGTTTGATTACACCATCTGTGAAGAATGCGGGAAAGAGTTCATGGACTCGTACCTTAT
GAACCACTTTGATCTGCCAACGTGTGACAGCTGCAGAGATGCTGATGATAAACACAAGCTTATAACCAAG
ACAGAAGCGAAGCAAGAGTACCTTCTGAAGGACTGTGATCTAGAGAAGAGAGAGCCAGCGCTCAGGTTCC
TTGTGAAGAAGAACCCACGCCATTCACAGTGGGGCGATATGAAGCTCTACCTAAAGCTACAGGTGGTAAA
GCGGGCTCTTGAAGTGTGGGGTAGCCAGGAAGCTCTGGAAGATGCAAAGGAAGTGAGGCAGGAAAACCGA
GAAAAAATGAAGCAGAAGAAGTTTGATAAAAAAGTAAAAGAATTGCGGCGAGCAATAAGAAGCAGTGTAT
GGAAAAGAGAGACAACCACTCACCAACATAAATATGGACCAGAGGAAAACTTAGAAGATGACATGTACCG
CAAGACTTGTACCTTGTGTGGCCACGAACTGACATATGAAAAAATGTGA

Translation (272 aa):
MATAEEKQTSPEPVAADEPAQLPAAVRASVERKRQRALMLRQARLAARPYPAAAATGGVASVKAAPKMID
TKGGFILEEEEEKHEIGNIVHEPGPVMEFDYTICEECGKEFMDSYLMNHFDLPTCDSCRDADDKHKLITK
TEAKQEYLLKDCDLEKREPALRFLVKKNPRHSQWGDMKLYLKLQVVKRALEVWGSQEALEDAKEVRQENR
EKMKQKKFDKKVKELRRAIRSSVWKRETTTHQHKYGPEENLEDDMYRKTCTLCGHELTYEKM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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