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Report for CCDS18112.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18112.1 Public Mus musculus 4 Or13c7d 23 108 98 CCDS HistoryNCBI Gene:29849Re-query CCDS DB by CCDS ID:18112.1Re-query CCDS DB by GeneID:29849See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18112.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053931.1 ENSMUSP00000060784.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053931.1Link to Ensembl Protein Viewer:ENSMUSP00000060784.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000053931Re-query CCDS DB by Protein ID:ENSMUSP00000060784
Original member Current member NCBI NM_019476.1 NP_062349.1 Accepted alive Link to Nucleotide Sequence:NM_019476.1Link to Protein Sequence:NP_062349.1Re-query CCDS DB by Nucleotide ID:NM_019476Re-query CCDS DB by Protein ID:NP_062349Link to BLAST:NP_062349.1

Chromosomal Locations for CCDS 18112.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 43770050 43771009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (960 nt):
ATGGAGAGATCCAACAAGACCACCCCTGTGTCCAGCTTCATCCTCCTGGGTCTCTCCGCCCACCCAAAGC
TGGAGAAAACCTTCTTCGTGCTCATCCTGCTGATGTACCTGGTGATCCTGCTGGGCAATGTCGTCCTCAT
CCTGGTGAGCATCCTCGACTCCCACCTGCACACGCCCATGTACTTCTTCCTGGGGAACCTCTCCTTCCTG
GACATCTGCTACACCACCTCCTCCGTCCCCCTCATTCTGGACAGCTTCCTGACCCCCAGGAAGACCATCT
CCTTCTCGGGCTGTGCCGTGCAGATGTTTCTCTCCTTCGCCATGGGAGCCACAGAGTGTGTGCTCCTGGG
CATGATGGCGTTTGATCGTTATGTGGCCATCTGCAACCCCCTTAGATATCCTGTGGTCATGAGCAAGGCT
GCCTATGTGCCCATGGCCGCCGGCTCCTGGGTATCTGGAAGCATCACTGCCACAGTGCAGATATCTTTAG
CAATGACACTGCCCTTCTGTGGGGACAATGTCATCAATCACTTTACATGTGAGATCCTGGCAGTCCTGAA
ACTGGCCTGTGCTGACATCTCCATCAATGTCATCAGCATGGCAGTGGCTAATGCAATGTTTTTGGGGGTC
CCTGTCCTCTTCATCTTTGTCTCCTACATCTTCATACTCTCCACCATCCTGAGGATCCCCTCTGCCGAGG
GGAGGAAGAAGGCCTTCTCCACCTGCTCTGCCCACCTCACCGTGGTACTTGTCTTCTATGGGACCATCCT
GTTCATGTACGGGAAGCCCAAATCCAAGGACCCATTGGGGGCAGACAAACAGGACCTTGCAGACAAGCTC
ATCTCCCTCTTCTATGGAGTGGTGACCCCCATGCTGAACCCCATCATCTACAGCCTGAGGAACAAGGATG
TGAAGGCCGCTGTGACAAACCTGGTGGGCCAGAAACACTTCAAGTGGTGA

Translation (319 aa):
MERSNKTTPVSSFILLGLSAHPKLEKTFFVLILLMYLVILLGNVVLILVSILDSHLHTPMYFFLGNLSFL
DICYTTSSVPLILDSFLTPRKTISFSGCAVQMFLSFAMGATECVLLGMMAFDRYVAICNPLRYPVVMSKA
AYVPMAAGSWVSGSITATVQISLAMTLPFCGDNVINHFTCEILAVLKLACADISINVISMAVANAMFLGV
PVLFIFVSYIFILSTILRIPSAEGRKKAFSTCSAHLTVVLVFYGTILFMYGKPKSKDPLGADKQDLADKL
ISLFYGVVTPMLNPIIYSLRNKDVKAAVTNLVGQKHFKW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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