NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS18010.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18010.1 Public Mus musculus 4 Ufl1 23 108 98 CCDS HistoryNCBI Gene:67490Re-query CCDS DB by CCDS ID:18010.1Re-query CCDS DB by GeneID:67490See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18010.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102994.9 ENSMUSP00000100059.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102994.9Link to Ensembl Protein Viewer:ENSMUSP00000100059.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102994Re-query CCDS DB by Protein ID:ENSMUSP00000100059
Original member Current member NCBI NM_001355512.1 NP_001342441.1 Accepted alive Link to Nucleotide Sequence:NM_001355512.1Link to Protein Sequence:NP_001342441.1Re-query CCDS DB by Nucleotide ID:NM_001355512Re-query CCDS DB by Protein ID:NP_001342441Link to BLAST:NP_001342441.1
Original member Current member NCBI NM_026194.5 NP_080470.2 Accepted alive Link to Nucleotide Sequence:NM_026194.5Link to Protein Sequence:NP_080470.2Re-query CCDS DB by Nucleotide ID:NM_026194Re-query CCDS DB by Protein ID:NP_080470Link to BLAST:NP_080470.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342441.1 793 Q8CCJ3-3 793 100% 0 0
NP_080470.2 793 Q8CCJ3-3 793 100% 0 0

Chromosomal Locations for CCDS 18010.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 25250470 25250688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25251336 25251516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25251932 25252017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25252299 25252379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25254559 25254689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25254771 25254934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25255998 25256115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25259215 25259337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25262206 25262326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25265423 25265602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25267692 25267867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25269028 25269174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25270560 25270618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25275806 25275936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25277989 25278103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25278604 25278701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25279346 25279374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25280623 25280768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25281676 25281752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2382 nt):
ATGGCGGACGCCTGGGAGGAGATCCGGCGGCTGGCGGCTGACTTCCAGCGGGCGCAGTTTGCAGAGTCCA
CGCAAAGGTTGTCAGAGCGGAACTGCATTGAGATTGTGAATAAATTGATCTCTCAGAAACAGCTGGAAGT
AGTCCATACACTTGACGGCAAGGAATATATCACTCCAGCCCAAATCAGTAAAGAAATGAGAGACGAGCTA
CATGTCCGAGGTGGTCGAGTAAACATTGTTGACTTACAACAGGTTATTAATGTGGACCTGACTCATATCG
AGAGTAGAGTCAGTGATATTATTAAATCAGAGAAGCACGTGCAGATGGTACTGGGACAACTGATTGATGA
GAACTATCTGGATCAGTTATCAGAAGAGGTGAATGATAAATTGCAAGAAAGTGGTCAAGTAACTGTCTCA
GAACTGTGTAAAGCCTATGACCTTCCTGGGGATTTTCTGACACAGGCATTAACTCAGCGACTTGGCCGGA
TTATCAATGGCCATCTGGACCTTGATAACAGAGGAGTGATTTTCACTGAGGCCTTTGTAGCTCGCCATAA
AGCACGTATCCGCGGACTCTTCAGTGCCATTACACGGCCTACACCAGTGAACTCTTTGGTTTCAAAATAT
GGATTTCAGGAACAGCTCCTTTACTCTGTGCTCGAGGACCTCGTCAGCACTGGCCGCTTACGAGGCACCG
TGGTCGGCGGGCGACAGGATAAAGCAGTCTTTGTCCCTGACATCTACTCCAGGACACAGAGTACTTGGGT
GGACTCCTTTTTCAGGCAGAATGGCTATCTAGAATTTGACGCTTTATCCAGACTTGGAATCCCAGATGCT
GTGAACTATATAAAGAAAAGGTATAAGAATACCCAACTCTTGTTTTTGAAGGCAACTTGTGTTGGCCAAG
GACTCGTAGACCAGGTGGAAGCATCCGTAGAGGAAGCCATCAGCTCAGGGACCTGGGTTGACATTTCGCC
TCTGCTACCCAGTTCCTTGTCAGTTGAAGATGCTGCTATGCTGCTCCAGCAGGTGATGAGACCATTCGGC
AAGCTCGCTTCAGCTATAGTCTTTAGTGACACGGTTGTGGTGAGTGAAAAGTTCATAACTGACTGCACAG
GACTGTTCAGCGAACGGATGCACCAAAAAGCTGAGAAGGAAATGAAAAATAATCCTGTGCATTTAATCAC
TGAAGAAGATCTGAAACAAATTTCCATTTTAGAAAGTGTTAATACAAGTAAAAAGGATAAAAAAGATGAA
CGCAGGAAGAAAGCAACAGAGGGCTCTGGAAGTGTAAGAGGAGGAGGAGGGGGCAATGCCAGAGAATATA
AAATTAAGAAAACCAAGAAGAAGGGAAGAAAAGATGAGGACAGTGATGATGAGTCCCAGTCGTCGCATGG
TGGAAAGAAGAAGCCGGACATCACATTCATGTTCCAGGATGAAATTGAAGATTGCTTAAGGAAACACATT
CAGGATGCCCCTGAGGAGTTTATTTCAGAGCTTGCAGAATACTTAATAAAGCCTCTTAATAAAATGTATC
TTGAGGTAGTACGTTCAGTCTTCATGTCTTCAACATCTGCTTCTGGAACTGGCAGAAAACGCACAATCAA
GGACTTACAAGAAGAGGTTTCAAACCTATACAATAATATCAGATTATTTGAAAAGGGAATGAAATATTTT
GCAGATGACACACAGACTGCTCTTACCAAGCACTTGCTGAAGACAGTGTGTACCGATATCACTAACCTCA
TGTTCAACTTCCTAGCCTCAGATTTCCTCATGGCAGTGGAGGAGCCTGCAGCCATTACAAGTGATATAAG
AAAAAAAATTTTAAGCAAATTGACAGAAGAAACCAAAGTAGCTCTCACAAAACTCCATAACTCTCTCAAT
GAAAAAAGCATAGAAGACTTCCTGTCTTGCCTGGATTCTGCCACAGAAGCGTGTGACATTATGGTGAAAA
AGGGAGACAAGAAAAGGGAAAGACAAATCCTCTTCCAGCATCGACAGGCTCTGTGTGAGCAGCTGAAGGT
CACAGAAGACCCTGCTCTGATTTTACACCTCACAGCAGTCCTGTTATTTCAGCTCTCAACCCACAGCATG
CTCCACGCACCTGGAAGGTGTGTCCCACAGATCATCGCGTTTCTTCACAGCAAAATCCCAGAGGATCAAC
ATACTCTCTTGGTAAAATATCAAGGTTTGGTTGTGAAACAGTTAGTCAGTCAAAATAAGAAGACTGGGCA
GGGAGAGGATCCGTCAAGCGATGAATTAGACAAGGAACAACATGATGTCACAAACGCTACTCGGAAAGAG
CTTCAGGAACTGTCATTATCCATTAAGGACCTTGTTCTCAAGTCCAGGAAATCATCTGTCACAGAGGAGT
AA

Translation (793 aa):
MADAWEEIRRLAADFQRAQFAESTQRLSERNCIEIVNKLISQKQLEVVHTLDGKEYITPAQISKEMRDEL
HVRGGRVNIVDLQQVINVDLTHIESRVSDIIKSEKHVQMVLGQLIDENYLDQLSEEVNDKLQESGQVTVS
ELCKAYDLPGDFLTQALTQRLGRIINGHLDLDNRGVIFTEAFVARHKARIRGLFSAITRPTPVNSLVSKY
GFQEQLLYSVLEDLVSTGRLRGTVVGGRQDKAVFVPDIYSRTQSTWVDSFFRQNGYLEFDALSRLGIPDA
VNYIKKRYKNTQLLFLKATCVGQGLVDQVEASVEEAISSGTWVDISPLLPSSLSVEDAAMLLQQVMRPFG
KLASAIVFSDTVVVSEKFITDCTGLFSERMHQKAEKEMKNNPVHLITEEDLKQISILESVNTSKKDKKDE
RRKKATEGSGSVRGGGGGNAREYKIKKTKKKGRKDEDSDDESQSSHGGKKKPDITFMFQDEIEDCLRKHI
QDAPEEFISELAEYLIKPLNKMYLEVVRSVFMSSTSASGTGRKRTIKDLQEEVSNLYNNIRLFEKGMKYF
ADDTQTALTKHLLKTVCTDITNLMFNFLASDFLMAVEEPAAITSDIRKKILSKLTEETKVALTKLHNSLN
EKSIEDFLSCLDSATEACDIMVKKGDKKRERQILFQHRQALCEQLKVTEDPALILHLTAVLLFQLSTHSM
LHAPGRCVPQIIAFLHSKIPEDQHTLLVKYQGLVVKQLVSQNKKTGQGEDPSSDELDKEQHDVTNATRKE
LQELSLSIKDLVLKSRKSSVTEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH