NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS17987.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17987.1 Public Mus musculus 4 Osgin2 23 108 98 CCDS HistoryNCBI Gene:209212Re-query CCDS DB by CCDS ID:17987.1Re-query CCDS DB by GeneID:209212See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17987.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037198.9 ENSMUSP00000047473.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037198.9Link to Ensembl Protein Viewer:ENSMUSP00000047473.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000037198Re-query CCDS DB by Protein ID:ENSMUSP00000047473
Original member Current member NCBI NM_145950.5 NP_666062.3 Accepted alive Link to Nucleotide Sequence:NM_145950.5Link to Protein Sequence:NP_666062.3Re-query CCDS DB by Nucleotide ID:NM_145950Re-query CCDS DB by Protein ID:NP_666062Link to BLAST:NP_666062.3

Chromosomal Locations for CCDS 17987.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 15997968 15999000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 16001930 16002021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 16005357 16005548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 16006357 16006493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 16008601 16008755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 16013687 16013730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1653 nt):
ATGCCTGTGTGGTGCTGCCGCTGCTCCCTGGCCGGTCATTTCAGAAACTATAGTGACACTGAAACTGAAG
GAGAGATTTTTAATTCTTTTGTGCAATATTTTGGTGACAATTTGGGGCCAAAAGTTAAAGGGATGCCATT
AGTTGAAGAAACGTCTTTACTTGAAGATTCATCAGTGACTTTGCCTATGGTAATAATTGGAAATGGACCT
TCAGGAATATGCCTTTCATATATGCTGTCAGGCTACAGACCGTATTTATCATCGGAAGCAATACATCCAA
ATACAATCTTACATAGTAAACTAGAAGAAGCAAGACATCTGTCCATTGTGGATCAGGACTTAGAATACCT
GTCTGAGGGTCTTGAGGGGCGATCGTCCAATCCAGTGGCAGTCCTTTTTGACACCCTTCTTCACCCAGAT
GCTGACTTCGGATATGAGTCTCCATCCATTCTGCACTGGAAATTGGAACAACATCATTATATCCCTCACT
TAGTTCTTGGTAAGGGCCCGCCTGGTGGGGCATGGCATAATATGGAAGGTTCTATGTTGACAATCAGCTT
TGGAAATTGGATGGAGCTTCCTGGACTTCAATTTAAAGACTGGATATCTAGCAAACGAAGGAACTTAAAG
GGGGACCGTGTCATGCCGGAGGAAATAGCTCGCTACTACAAGCACTACGTAAAGGTCATGGGCCTTCAGA
AGAATTTTCGAGAGAATACTTACATAACCTCTGTATCAAGACTCTATAGAGACCAAGGTGATAACGGTAG
TCAAGACAGAGATATTTCCACAAAGCATTTACAGAACCAGAAGTCAAAATTTATCAAGAGAAACTGGGAA
ATCAGAGGCTATCAGCGAATAGCAGGTGGTTCTCATGTTCCCTTTTGCCTCTTTGCTGAGAATGTAGCTC
TTGCAACTGGAACTTTGGATTCTCCTGCCCATCTGGAAGTTGAAGGGGAAGAGTTTCCGTTTGTGTTTCA
TTCGATGCCTGAGTTTGGAGCTGCTATAAACAAAGGAAAGCTGTGTGGCAGAGTGGACCCAGTGCTGATT
GTAGGTTCCGGCCTTACTGCCGCTGATGCAGTGCTCTGTGCCTATAACAATAATATCCCTGTGATCCACG
TGTTTCGCAGACGAGTAACTGATCCAAGCTTAATTTTCAAACAGCTTCCCAAAAAGCTGTATCCTGAGTA
CCACAAAGTCTACCATATGATGTGTAGTCAGTCCTACTCTGCAGACTCAGGTCCTCTGTCTGATTATACC
AGCTTTCCTGAGCACCGTGTGCTTTCCTTTAAGGCAGACATGAAATGCATTCTTCAAAGTGTCTCTGGAT
TGAAGAAAATATTTAAGCTGTCTGCAGCTGTAATCTTGATAGGTTCTCATCCTAACCTATCTTTTCTAAA
GGAACAAGGGTGTTACCTAGGCCGTAACTCAAGCCAGCCAATAACATGCAAGGGTAACCCTGTGGAGGTT
GATGCATACACCTATGAATGTGTTAAAGAAGCCAATCTTTTTGCTTTGGGCCCTTTGGTTGGAGATAATT
TCGTTCGATTCTTAAAGGGAGGGGCATTGGGTGTTACTCGCTGTTTGGCTACAAGACAGAAGAAAAAGCA
GCATTTGTTTGTTCAAAGAGGAGGAGGAGATGGGGTAGCTTAA

Translation (550 aa):
MPVWCCRCSLAGHFRNYSDTETEGEIFNSFVQYFGDNLGPKVKGMPLVEETSLLEDSSVTLPMVIIGNGP
SGICLSYMLSGYRPYLSSEAIHPNTILHSKLEEARHLSIVDQDLEYLSEGLEGRSSNPVAVLFDTLLHPD
ADFGYESPSILHWKLEQHHYIPHLVLGKGPPGGAWHNMEGSMLTISFGNWMELPGLQFKDWISSKRRNLK
GDRVMPEEIARYYKHYVKVMGLQKNFRENTYITSVSRLYRDQGDNGSQDRDISTKHLQNQKSKFIKRNWE
IRGYQRIAGGSHVPFCLFAENVALATGTLDSPAHLEVEGEEFPFVFHSMPEFGAAINKGKLCGRVDPVLI
VGSGLTAADAVLCAYNNNIPVIHVFRRRVTDPSLIFKQLPKKLYPEYHKVYHMMCSQSYSADSGPLSDYT
SFPEHRVLSFKADMKCILQSVSGLKKIFKLSAAVILIGSHPNLSFLKEQGCYLGRNSSQPITCKGNPVEV
DAYTYECVKEANLFALGPLVGDNFVRFLKGGALGVTRCLATRQKKKQHLFVQRGGGDGVA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH