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Report for CCDS17972.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17972.1 Public Mus musculus 4 Cdh17 23 108 98 CCDS HistoryNCBI Gene:12557Re-query CCDS DB by CCDS ID:17972.1Re-query CCDS DB by GeneID:12557See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17972.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029871.11 ENSMUSP00000029871.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029871.11Link to Ensembl Protein Viewer:ENSMUSP00000029871.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000029871Re-query CCDS DB by Protein ID:ENSMUSP00000029871
Original member Current member NCBI NM_019753.4 NP_062727.1 Accepted alive Link to Nucleotide Sequence:NM_019753.4Link to Protein Sequence:NP_062727.1Re-query CCDS DB by Nucleotide ID:NM_019753Re-query CCDS DB by Protein ID:NP_062727Link to BLAST:NP_062727.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062727.1 827 Q9R100 827 100% 0 0

Chromosomal Locations for CCDS 17972.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 11767756 11767803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11771268 11771366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11780092 11780226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11781151 11781289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11783082 11783240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11783336 11783535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11784626 11784757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11785122 11785272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11795485 11795700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11797695 11797771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11799561 11799752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11803877 11804121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11807430 11807560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11810235 11810474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11814611 11814727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11814857 11814970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11816986 11817074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2484 nt):
ATGGTGTCTGCCCAGCTTCACTTCCTGTGTCTTCTCACACTTTATTTGACCTGTGGATATGGCGAAGAAG
GGAAGTTCAGCGGTCCCCTGAAGCCCATGACATTCTCCATTTTTGAAGGCCAAGAACCGAGTCAAGTCAT
ATTCCAGTTTAAGACCAACCCTCCAGCTGTGACTTTCGAGCTAACGGGAGAGACAGATGGTATATTTAAG
ATAGAAAAGGATGGACTTCTGTATCACACAAGAGCCCTGGACAGAGAAACAAGAGCGGTTCATCATCTGC
AGCTTGCAGCCTTGGATTCTCATGGAGCTATAGTGGACGGTCCAGTCCCCATCACCATAGAAGTCAAGGA
CATCAATGACAACCGACCCACGTTTCTCCAGTCAAAATATGAAGGCTCAGTGAGGCAGAACTCTCGCCCA
GGAAAGCCTTTCATGTATGTCAATGCTACAGATCTGGATGATCCGGCTACTCCCAATGGCCAGCTTTTTT
ATCAAATTGTCATCCAACTTCCCCAAATCAACGATGTTATGTACTTTCAAATCGACAGCAAAACAGGGGC
AATATCGCTTACCCCAGAAGGATCCCAGGAATTGGATCCAGTGAAGAATCCTTCCTACAACCTGGTGGTC
TCGGTGAAGGACATGGGGGGCCAGAGTGAGAATTCCTTCAGTGATACTACATATGTAGATATTTCTATTA
GAGAGAATATCTGGAAAGCACCAGAACCCGTGGAGATTAGAGAAAACTCGACTGATCCTCACCCCATCAA
AATCACTCAGGTGCAGTGGAATGACCCAGGGGCCCAGTATTCCTTAGTCAACAAGGAGAAGCTGTCGCCG
TTCCCATTCTCGATCGACCAAGAAGGAAATATTTATGTGACTCAGGCCTTGGACCGGGAGGAAAAGAACT
CACATGTTTTCTTTGCAACTGCCAAGGATGAGAATGGAAAACCACTTGCATATCCACTGGAAATTTATGT
GAAAGTTATTGACATTAATGACAACCCACCGACATGTCTGTCTCCAGTGACTGTATTTGAAGTCCAGGAG
AATGAACCATTGGGTAACAGCATCGGGATCTTTGAGGCCCATGATATGGACGAAGCTAACAACATCAACA
GTATTTTGAAATACAAGCTTGTAGACCAAACACCCAAAGTTCCCTCAGATGGACTTTTTCTCATTGGTGA
ATATGAGGGAAAGGTTCAGTTAAGTAAACAGTCCTTGAAGAAGCAAGACAGTCCTCAGTACAACTTAAGT
ATCGAGGTGTCTGACGTAGATTTCAAGACTCTCTGTTATATTCAAGTCAACGTTATTGATATCAATGATC
AGATTCCCATCTTTGAAACATCAAATTATGGAAGCAAGACTCTGTCTGAAGACACCGCCATCGGATCCAC
CATCCTAATCATCCAAGCTACAGATGCTGATGAGCCCTTTACAGGGAGCTCTAAAATCCTGTACAAGATT
GTACAGGGAGACACGGAGGGAAGACTAGAAGTTGTCACAGATCCCACGACCAATGCAGGATATGTCAAGA
TCAAAAAGCCTCTTGATTTTGAAACTCAACCAGTTAGCAGCATTGTGTTCCAAGCGGAAAATCCTGAGCC
ACTGGTGAAAGGCATAGAGTACAATGCTAGTTCTTTTGCCTCCTTCGAGCTGATTGTGACGGATGTGAAT
GAAGTGCCTGTGTTCCCCCAGCGAATATTCCAAGCAAACGTCAGCGAGGATGCTGCTGTGGGCAGTAGAG
TGGGCAACGTGACTGCCAGGGATCCTGAAGGCCTGACTGTGAGTTATTCACTGAAAGGCAATATGAGAGG
CTGGCTTAAAATCGACTCTGTCACTGGTGAGATATTTAGTGCTGCTCCGCTGGATAGGGAAACAGAAAGT
GTGTATCGAGTACAAGTGGTGGCCACTGAAGTAGGTGGGTCCTCTCTGAGTTCTACGGCAGATTTCCACC
TGGTCCTCACAGATGTGAATGACAACCCCCCTCGCCTAGCTAAGGACTACACAGGCTTGTTCTTCTGCCA
TCCCCTCAGTGCCCCTGGGAGCCTCATCTTTGAGGTCACTGACGATGACCAGCAGTCACTTCGGAGGCCC
AAGTTTACATTCGCCCTTGGCAGAGAAGGCTTACAAAGTGACTGGGAAGTTTCAAAAATCAATGGTACAC
ATGCTAGACTCTCCACCAGGCACACACGCTTTGAGGAACAAGTTTATAACATTCCAATCCGCATCAATGA
TGGGGGGCAGCCACCCATGGAAGGGACTGTCTTCTTACCAGTTACTTTCTGCCAGTGTGTGGAAGGAAGC
TGTTTCCGGCCAGCAGGCAGACAGGATGGGATACCCACTGTGGGCATGGCAGTTGGTATACTTCTGACCA
CATTTCTGGTCATTGGTATAATTTTAGCAGTTGTCTTCATCCGCATGAGGAAAGATAAAGTTGAAAATCC
GCAGTCCCCTGAGAATAAGCCTCTGAGAAGCTGA

Translation (827 aa):
MVSAQLHFLCLLTLYLTCGYGEEGKFSGPLKPMTFSIFEGQEPSQVIFQFKTNPPAVTFELTGETDGIFK
IEKDGLLYHTRALDRETRAVHHLQLAALDSHGAIVDGPVPITIEVKDINDNRPTFLQSKYEGSVRQNSRP
GKPFMYVNATDLDDPATPNGQLFYQIVIQLPQINDVMYFQIDSKTGAISLTPEGSQELDPVKNPSYNLVV
SVKDMGGQSENSFSDTTYVDISIRENIWKAPEPVEIRENSTDPHPIKITQVQWNDPGAQYSLVNKEKLSP
FPFSIDQEGNIYVTQALDREEKNSHVFFATAKDENGKPLAYPLEIYVKVIDINDNPPTCLSPVTVFEVQE
NEPLGNSIGIFEAHDMDEANNINSILKYKLVDQTPKVPSDGLFLIGEYEGKVQLSKQSLKKQDSPQYNLS
IEVSDVDFKTLCYIQVNVIDINDQIPIFETSNYGSKTLSEDTAIGSTILIIQATDADEPFTGSSKILYKI
VQGDTEGRLEVVTDPTTNAGYVKIKKPLDFETQPVSSIVFQAENPEPLVKGIEYNASSFASFELIVTDVN
EVPVFPQRIFQANVSEDAAVGSRVGNVTARDPEGLTVSYSLKGNMRGWLKIDSVTGEIFSAAPLDRETES
VYRVQVVATEVGGSSLSSTADFHLVLTDVNDNPPRLAKDYTGLFFCHPLSAPGSLIFEVTDDDQQSLRRP
KFTFALGREGLQSDWEVSKINGTHARLSTRHTRFEEQVYNIPIRINDGGQPPMEGTVFLPVTFCQCVEGS
CFRPAGRQDGIPTVGMAVGILLTTFLVIGIILAVVFIRMRKDKVENPQSPENKPLRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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