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Report for CCDS17941.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17941.1 Public Mus musculus 4 Plag1 23 108 98 CCDS HistoryNCBI Gene:56711Re-query CCDS DB by CCDS ID:17941.1Re-query CCDS DB by GeneID:56711See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17941.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003369.9 ENSMUSP00000003369.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003369.9Link to Ensembl Protein Viewer:ENSMUSP00000003369.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000003369Re-query CCDS DB by Protein ID:ENSMUSP00000003369
Original member Current member NCBI NM_019969.3 NP_064353.2 Accepted alive Link to Nucleotide Sequence:NM_019969.3Link to Protein Sequence:NP_064353.2Re-query CCDS DB by Nucleotide ID:NM_019969Re-query CCDS DB by Protein ID:NP_064353Link to BLAST:NP_064353.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064353.2 499 Q9QYE0 499 100% 0 0

Chromosomal Locations for CCDS 17941.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 3903690 3904947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3905447 3905688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1500 nt):
ATGGCCACTGTCATTCCTGGTGATTTGTCAGAAGTAAGAGATACCCAGAAAGCCCCTTCAGGGAAACGTA
AGCGTGGTGAAAGCAAACCAAGAAAAAACTTTCCTTGCCAACTGTGTGACAAGGCCTTTAACAGTGTTGA
GAAATTAAAGGTTCACTCCTTCTCTCACACGGGAGAGAGGCCCTACAAGTGCACACACCAAGACTGCACC
AAGGCCTTTGTTTCTAAGTACAAATTACAAAGGCACATGGCTACTCACTCTCCTGAGAAAACCCACAAGT
GTAATTACTGTGAGAAAATGTTTCACCGGAAAGACCATCTGAAGAATCACCTCCATACACATGACCCCAA
CAAAGAGACCTTTAAATGCGAAGAGTGTGGCAAGAGCTACAATACCAAGCTTGGTTTTAAGCGACACTTG
GCCTTGCATGCTGCCACCAGTGGTGACCTCACCTGCAAGGTGTGTTTGCAGAATTTTGAGAGCACAGGTG
TGCTCCTAGAGCACCTGAAATCTCACGCGGGCAAGTCATCTGGGGGTGTGAAGGAGAAAAAGCACCAATG
TGAGCACTGCGAACGCAGGTTCTACACCCGGAAGGATGTCCGGAGACACATGGTGGTACACACAGGAAGA
AAGGACTTCCTCTGTCAGTACTGCGCACAGAGATTTGGACGAAAGGATCACCTCACTCGACACATGAAGA
AGAGTCACAATCAGGAGCTTCTGAAGGTCAAAACGGAACCAGTAGATTTCCTGGACCCATTTACCTGCAA
CATGTCTGTGCCTATAAAAGATGAACTCCTGCCGGTCATGTCCTTACCTTCCAGTGAACTCTTGTCAAAG
CCATTCACAAACACTTTGCAGTTAAACCTCTATAACACTCCATTTCAGTCCATGCAGAGCTCTGGGTCTG
CTCACCAAATGATAACAACTTTACCTTTGGGAATGACATGCCCCATAGATATGGATGCTGTTCACCCCTC
TCATCATCTTGCTTTCAAATGCCCATTCAGTTCTACCTCATACGCAATCTCTATTCCTGAAAAAGAACAG
CCATTAAAGGGGGAAATTGAGAGTTACCTGATGGAGCTACAAGGTGGTGCACCATCTTCATCCCAGGATT
CTCCAGCATCGTCATCTAAGCTAGGGTTAGAGCCTCAGAGTGGGTCGCCAGATGATGGTGCTGGGGACCT
CTCCCTGTCAAAGAGCTCTATCTCTATCAGTGACCCCCTCAGCACACCAGCATTGGATTTCTCTCAGTTG
TTCAATTTCATACCATTGAATGGTCCCCCTTATAACCCACTTTCAGTGGGAAGCCTTGGGATGAGCTATT
CCCAGGAGGAAGCACACTCTTCTGTCTCTCAGCTGCCCACACAAACACAGGATCTTCAGGACCCTGCAAA
CACTGTGGGTCTAAGTTCTCTGCACTCACTGTCGGCAGCGTTCACCAGCAGCCTGAGCTCAAGCACTACC
TTGCCCCGTTTCCACCAGGCGTTTCAGTAG

Translation (499 aa):
MATVIPGDLSEVRDTQKAPSGKRKRGESKPRKNFPCQLCDKAFNSVEKLKVHSFSHTGERPYKCTHQDCT
KAFVSKYKLQRHMATHSPEKTHKCNYCEKMFHRKDHLKNHLHTHDPNKETFKCEECGKSYNTKLGFKRHL
ALHAATSGDLTCKVCLQNFESTGVLLEHLKSHAGKSSGGVKEKKHQCEHCERRFYTRKDVRRHMVVHTGR
KDFLCQYCAQRFGRKDHLTRHMKKSHNQELLKVKTEPVDFLDPFTCNMSVPIKDELLPVMSLPSSELLSK
PFTNTLQLNLYNTPFQSMQSSGSAHQMITTLPLGMTCPIDMDAVHPSHHLAFKCPFSSTSYAISIPEKEQ
PLKGEIESYLMELQGGAPSSSQDSPASSSKLGLEPQSGSPDDGAGDLSLSKSSISISDPLSTPALDFSQL
FNFIPLNGPPYNPLSVGSLGMSYSQEEAHSSVSQLPTQTQDLQDPANTVGLSSLHSLSAAFTSSLSSSTT
LPRFHQAFQ


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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