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Report for CCDS17882.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17882.1 Public Mus musculus 3 Gtf2b 23 108 98 CCDS HistoryNCBI Gene:229906Re-query CCDS DB by CCDS ID:17882.1Re-query CCDS DB by GeneID:229906See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 17882.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029938.9 ENSMUSP00000029938.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029938.9Link to Ensembl Protein Viewer:ENSMUSP00000029938.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000029938Re-query CCDS DB by Protein ID:ENSMUSP00000029938
Original member Current member NCBI NM_145546.1 NP_663521.1 Accepted alive Link to Nucleotide Sequence:NM_145546.1Link to Protein Sequence:NP_663521.1Re-query CCDS DB by Nucleotide ID:NM_145546Re-query CCDS DB by Protein ID:NP_663521Link to BLAST:NP_663521.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663521.1 316 P62915 316 100% 0 0

Chromosomal Locations for CCDS 17882.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 142765272 142765288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142771386 142771492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142778191 142778324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142779692 142779838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142779970 142780099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142781340 142781621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142783196 142783329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (951 nt):
ATGGCGTCGACCAGCCGTTTGGATGCTCTCCCAAGAGTCACATGTCCGAATCATCCAGATGCAATTTTAG
TTGAAGACTACAGAGCTGGCGATATGATCTGTCCCGAATGTGGCCTAGTTGTAGGGGACCGAGTTATTGA
TGTGGGATCTGAATGGAGAACTTTCAGCAATGACAAAGCAACAAAAGACCCATCTAGAGTTGGAGACTCT
CAGAATCCTCTTCTGAGTGATGGAGATTTGTCCACCATGATTGGCAAGGGTACAGGAGCTGCAAGTTTTG
ATGAGTTTGGCAATTCTAAGTATCAGAACCGGAGAACAATGAGTAGCTCTGATCGAGCAATGATGAACGC
ATTCAAGGAAATCACGACCATGGCGGACAGAATCAACCTCCCTCGCAATATAGTTGATCGAACAAATAAT
TTATTCAAGCAAGTGTATGAGCAGAAGAGCCTGAAGGGCAGAGCTAATGACGCGATAGCCTCTGCTTGTC
TGTACATCGCCTGTAGACAAGAAGGCGTTCCCAGGACATTTAAAGAAATATGTGCTGTGTCTCGAATCTC
TAAGAAAGAAATTGGCCGCTGTTTTAAACTGATTTTGAAAGCTCTGGAAACCAGCGTGGATCTGATCACA
ACTGGGGACTTCATGTCCAGGTTCTGCTCCAACCTTTGCCTCCCCAAGCAAGTGCAGATGGCAGCTACAC
ACATAGCCCGCAAGGCAGTGGAGCTGGACTTGGTTCCTGGCAGGAGCCCGATCTCTGTGGCGGCAGCAGC
TATTTACATGGCTTCCCAGGCTTCAGCTGAGAAGCGAACACAGAAAGAAATCGGGGATATTGCTGGTGTT
GCTGATGTTACAATCCGACAGTCCTACAGACTGATCTACCCTCGGGCTCCGGATCTCTTCCCTTCAGACT
TCAAGTTTGACACCCCAGTGGACAAATTACCCCAGCTATAA

Translation (316 aa):
MASTSRLDALPRVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDS
QNPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNN
LFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETSVDLIT
TGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGV
ADVTIRQSYRLIYPRAPDLFPSDFKFDTPVDKLPQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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