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Report for CCDS17704.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17704.1 Public Mus musculus 3 Rhoc 23 108 98 CCDS HistoryNCBI Gene:11853Re-query CCDS DB by CCDS ID:17704.1Re-query CCDS DB by GeneID:11853See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17704.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002303.11 ENSMUSP00000002303.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002303.11Link to Ensembl Protein Viewer:ENSMUSP00000002303.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000002303Re-query CCDS DB by Protein ID:ENSMUSP00000002303
Original member Current member EBI ENSMUST00000106787.7 ENSMUSP00000102399.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106787.7Link to Ensembl Protein Viewer:ENSMUSP00000102399.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106787Re-query CCDS DB by Protein ID:ENSMUSP00000102399
Original member Current member EBI ENSMUST00000196817.4 ENSMUSP00000142697.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000196817.4Link to Ensembl Protein Viewer:ENSMUSP00000142697.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000196817Re-query CCDS DB by Protein ID:ENSMUSP00000142697
Original member Current member NCBI NM_001291859.1 NP_001278788.1 Accepted alive Link to Nucleotide Sequence:NM_001291859.1Link to Protein Sequence:NP_001278788.1Re-query CCDS DB by Nucleotide ID:NM_001291859Re-query CCDS DB by Protein ID:NP_001278788Link to BLAST:NP_001278788.1
Original member Current member NCBI NM_007484.2 NP_031510.2 Accepted alive Link to Nucleotide Sequence:NM_007484.2Link to Protein Sequence:NP_031510.2Re-query CCDS DB by Nucleotide ID:NM_007484Re-query CCDS DB by Protein ID:NP_031510Link to BLAST:NP_031510.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001278788.1 193 Q62159 193 100% 0 0
NP_031510.2 193 Q62159 193 100% 0 0

Chromosomal Locations for CCDS 17704.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 104791897 104792052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104792565 104792685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104792900 104793030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104793870 104794043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (582 nt):
ATGGCTGCGATCCGAAAGAAGCTGGTGATTGTGGGTGACGGTGCCTGTGGGAAGACCTGCCTCCTCATTG
TCTTCAGCAAAGATCAGTTTCCAGAGGTCTACGTGCCTACCGTCTTTGAGAACTATATAGCCGACATCGA
AGTGGATGGCAAGCAGGTGGAGCTGGCTCTGTGGGACACAGCTGGGCAAGAAGACTACGATCGCCTGCGG
CCTCTCTCCTACCCGGACACTGACGTCATCCTCATGTGTTTCTCCATTGACAGCCCTGACAGTTTGGAAA
ACATTCCTGAGAAGTGGACCCCAGAGGTGAAGCACTTTTGTCCCAACGTGCCCATCATCCTAGTGGGGAA
TAAAAAGGACCTGAGGCAAGATGAGCATACCAGGAGAGAGCTGGCCAAGATGAAACAGGAGCCGGTTCGA
TCTGAGGAAGGCCGGGACATGGCAAACAGGATCAGTGCCTTTGGCTACCTCGAGTGCTCGGCCAAGACTA
AGGAAGGGGTGCGGGAGGTATTTGAGATGGCCACTCGGGCGGGCCTACAGGTCCGGAAGAATAAGCGCCG
GAGGGGCTGTCCCATTCTCTGA

Translation (193 aa):
MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLR
PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVR
SEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQVRKNKRRRGCPIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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