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Report for CCDS17694.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17694.1 Public Mus musculus 3 Dclre1b 23 108 98 CCDS HistoryNCBI Gene:140917Re-query CCDS DB by CCDS ID:17694.1Re-query CCDS DB by GeneID:140917See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17694.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029435.14 ENSMUSP00000029435.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029435.14Link to Ensembl Protein Viewer:ENSMUSP00000029435.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000029435Re-query CCDS DB by Protein ID:ENSMUSP00000029435
Original member Current member EBI ENSMUST00000106834.7 ENSMUSP00000102447.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106834.7Link to Ensembl Protein Viewer:ENSMUSP00000102447.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106834Re-query CCDS DB by Protein ID:ENSMUSP00000102447
Original member Current member NCBI NM_133865.2 NP_598626.2 Accepted alive Link to Nucleotide Sequence:NM_133865.2Link to Protein Sequence:NP_598626.2Re-query CCDS DB by Nucleotide ID:NM_133865Re-query CCDS DB by Protein ID:NP_598626Link to BLAST:NP_598626.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598626.2 541 Q8C7W7-1 541 100% 0 0

Chromosomal Locations for CCDS 17694.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 103802968 103804055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103807394 103807576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103808072 103808237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103808900 103809088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1626 nt):
ATGAACGGGGTCGTAATCCCCCAAACGCCCATTGCTGTGGACTTTTGGAGCCTGCGCCGTGCCGGTTCGG
CGCGGCTCTTCTTCTTAACCCACATGCACTGTGACCACACGGTGGGTTTGTCTAGCACTTGGGCCCGGCC
CCTCTACTGCTCTCCCATCACTGCTTGCCTCTTGCATCGTCGCCTGCAGGTGTCTAAGCACTGGATCCGG
GCCCTGGAGGTTGGCGAGAGTCATGTATTACCTCTAGATGAAATTGGGCAAGAAACCATGACTGTAACGC
TCATAGATGCCAATCACTGCCCTGGTTCTGTCATGTTTCTCTTTGAAGGATACTTTGGAACAATTCTATA
CACAGGTGATTTTCGATATACACCATCCATGCTGAAGGAACCTGCTCTGATACTGGGGAAACAGATTCAT
ACTTTGTATCTAGACAACACTAATTGCAATCCAGCCCTGGTTCTTCCTTCCCGACAAGAGGCTACTCAGC
AGATTGTCCAGCTAATCCGACAGTTCCCACAACACAACATAAAAATTGGACTCTATAGTCTAGGAAAAGA
ATCACTGCTGGAGCAACTAGCCCTTGAGTTTCGGACCTGGGTGGTATTAAGTCCTCAACGCCTGGAGTTG
GTACAGTTGCTGGGCCTGGCAGACGTGTTCACAGTTGAGGAAGAAGCCGGGCGCATCCATGCTGTGGACC
ATACGGAGATCTGCCACTCTGCCATGCTTCAGTGGAACCAGAGTCACCCTACCATTGCTATTTTCCCCAC
AAGCCGGAAAGTGCGCAGCCCTCACCCCAGCATCTACACCGTCCCGTACTCTGACCATTCATCTTACTCC
GAGCTCCGTGCTTTTGTGGCAGCGCTGAGGCCTTGTCAGGTGGTGCCCATCGTCCATCAAAAGCCTTGTG
GAGAGTTCTTTCAGGACAGCTTGAGTCCTAGGCTCGCTATGCCTCTGATTCCACACTCTGTGCAGCAGTA
CATGAGTTCCTCCTCTAGGAAAACAAATGTGCTTTGGCAGTTAGAAAGGAGGCTCAAGAGGCCAAGAACT
CAGGGTGTTGTGTTTGAATCCCCTGAGGAGAAAGCTAATCAGGTTAAAGTTGACAGAGACTCAAAGAAGC
ACAAAAAGGAAAACCTCTCTCCCTGGGCTGGGCACCTTGAGAGGCTTTGCCCCCATCCTCTGCAGGCCAG
GAAGCAGTTGTTCCCAGACTTCTGCAGGAAAGAACGTGATGAGCCAGTCCTCTTTTGTGACTCCAACAAG
ATGGCGACTGTGTTGACTGCCCCACTGGAATTCTCAGTGCAATTACAACCTATAGATGAGTTTCTCTTTC
CAGAAACCAGGGAGAAAATTGGCTTAGAGTCCCCATTGCTGTCAAGGGGAGACAGTGGCTCACCAGCGAG
AGGGAACCAAAGTGACTGCGTAGGCTGTGGTTCTCCCCCGGCTCACATTAGCAGAGCTGTTCCTCTAACT
CCTGAGTCCAGGGGCCTGGCGCTAAAATACCTTCTCACTCCAGTGCATTTCCTCCAAGCAGGCTTCTCTT
CCAGGAACTTCGACAAGCAAGTGGAAAAACACCAGAGAGTACAGCGTAGCAGTCCTGCAGTTCTGAGCCC
GGTGGATGTTGGCTAG

Translation (541 aa):
MNGVVIPQTPIAVDFWSLRRAGSARLFFLTHMHCDHTVGLSSTWARPLYCSPITACLLHRRLQVSKHWIR
ALEVGESHVLPLDEIGQETMTVTLIDANHCPGSVMFLFEGYFGTILYTGDFRYTPSMLKEPALILGKQIH
TLYLDNTNCNPALVLPSRQEATQQIVQLIRQFPQHNIKIGLYSLGKESLLEQLALEFRTWVVLSPQRLEL
VQLLGLADVFTVEEEAGRIHAVDHTEICHSAMLQWNQSHPTIAIFPTSRKVRSPHPSIYTVPYSDHSSYS
ELRAFVAALRPCQVVPIVHQKPCGEFFQDSLSPRLAMPLIPHSVQQYMSSSSRKTNVLWQLERRLKRPRT
QGVVFESPEEKANQVKVDRDSKKHKKENLSPWAGHLERLCPHPLQARKQLFPDFCRKERDEPVLFCDSNK
MATVLTAPLEFSVQLQPIDEFLFPETREKIGLESPLLSRGDSGSPARGNQSDCVGCGSPPAHISRAVPLT
PESRGLALKYLLTPVHFLQAGFSSRNFDKQVEKHQRVQRSSPAVLSPVDVG


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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