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Report for CCDS17686.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17686.1 Public Mus musculus 3 Vangl1 23 108 98 CCDS HistoryNCBI Gene:229658Re-query CCDS DB by CCDS ID:17686.1Re-query CCDS DB by GeneID:229658See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17686.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029453.12 ENSMUSP00000029453.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029453.12Link to Ensembl Protein Viewer:ENSMUSP00000029453.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000029453Re-query CCDS DB by Protein ID:ENSMUSP00000029453
Original member Current member NCBI NM_177545.5 NP_808213.2 Accepted alive Link to Nucleotide Sequence:NM_177545.5Link to Protein Sequence:NP_808213.2Re-query CCDS DB by Nucleotide ID:NM_177545Re-query CCDS DB by Protein ID:NP_808213Link to BLAST:NP_808213.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808213.2 526 Q80Z96 526 100% 0 0

Chromosomal Locations for CCDS 17686.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 102158237 102158497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 102163299 102163533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 102165355 102165487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 102166838 102166971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 102183951 102184558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 102189409 102189547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 102196792 102196862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1581 nt):
ATGGATACCGAATCCACGTATTCTGGATATTCCTACTACTCAAGCCATTCCAAAAAATCTCACAGGCAAG
GGGAAAGAACAAGAGAAAGACACAAATCACCAAGGAATAAAGATGGCAGAGGGTCAGAAAAGTCTGTCAC
CATCCAGGCTCCTGCTGGAGAGCCCCTGCTGGCAAATGACTCTGCCCGCACAGGCGCAGAGGAAGTTCAG
GATGACAACTGGGGAGAGACCACCACCGCAATCACAGGCACCTCAGAGCACAGTATATCCCAAGAGGACA
TTGCCAGGATTAGCAAGGACATGGAGGACAGTGTGGGGCTGGATTGCAAGCGCTATCTGGGCCTCACCGT
TGCCTCGTTCCTTGGACTACTTGTCTTCCTCACCCCCATTGCCTTCATCCTGCTACCCCAAATCCTGTGG
AGGGAGGAGCTGAAACCCTGTGGCGCCATTTGTGAGGGACTTCTCATTTCTGTATCATTCAAACTGCTTA
TTCTGCTCATCGGAACCTGGGCACTTTTCTTCCGCAAGCAAAGAGCGGATGTGCCGCGGGTGTTTGTGTT
CCGAGCGCTGTTACTGGTCCTTATCTTTCTTTTTGTGGTTTCTTACTGGCTTTTTTATGGGGTCCGCATT
TTGGACTCTCGGGACCAAAATTACAAGGACATCGTGCAATACGCAGTCTCTCTTGTGGACGCGCTGCTTT
TCATCCACTACCTTGCCATCGTCCTGCTGGAGCTGAGGCAGCTGCAACCCATGTTCACCCTGCAGGTGGT
CCGCTCCACCGACGGAGAGTCCCGCTTCTACAGCTTGGGACACTTGAGCATCCAGCGAGCAGCCTTGGTG
GTTCTGGAAAATTACTACAAGGACTTCACCATCTATAACCCGAACCTCCTAACAGCATCCAAATTCCGAG
CAGCCAAGCACATGGCTGGCCTGAAAGTCTACAATGTAGATGGGCCTAGTAATAACGCCACTGGTCAGTC
CCGAGCCATGATTGCTGCAGCAGCTCGGCGCAGAGACTCCAGCCACAACGAGTTGTATTATGAAGAGGCC
GAACACGAACGCAGGGTGAAGAAGCGGAGAGCAAGACTGGTAGTGGCTGTGGAGGAAGCCTTCATCCATA
TCCAGCGTCTCCAGGCTGAGGAGCAGCAGAAGTCTCCCGGAGAGGTGATGGACCCCAGAGAGGCAGCCCA
GGCCATCTTCCCCTCCATGGCCAGGGCACTGCAGAAGTACCTGCGCACCACACGGCAGCAGCACTACCAC
AGCATGGAGAGTATCCTGCAGCACCTGGCCTTCTGCATCACCAACAGCATGACCCCCAAGGCTTTCCTTG
AACGATACCTCAGTGCGGGCCCCACCTTGCAGTATGACAAGGATCGATGGCTCTCGACACAGTGGAGACT
TATTAGTGAGGAGGCTGTGACAAACGGGTTACGGGATGGAATTGTTTTCGTCCTTAAATGCTTGGACTTC
AGCCTCGTGGTCAATGTGAAGAAAATCCCATTCATTGTACTCTCAGAAGAGTTCATAGACCCTAAATCTC
ACAAGTTTGTTCTTCGCTTACAGTCTGAGACATCAGTCTAA

Translation (526 aa):
MDTESTYSGYSYYSSHSKKSHRQGERTRERHKSPRNKDGRGSEKSVTIQAPAGEPLLANDSARTGAEEVQ
DDNWGETTTAITGTSEHSISQEDIARISKDMEDSVGLDCKRYLGLTVASFLGLLVFLTPIAFILLPQILW
REELKPCGAICEGLLISVSFKLLILLIGTWALFFRKQRADVPRVFVFRALLLVLIFLFVVSYWLFYGVRI
LDSRDQNYKDIVQYAVSLVDALLFIHYLAIVLLELRQLQPMFTLQVVRSTDGESRFYSLGHLSIQRAALV
VLENYYKDFTIYNPNLLTASKFRAAKHMAGLKVYNVDGPSNNATGQSRAMIAAAARRRDSSHNELYYEEA
EHERRVKKRRARLVVAVEEAFIHIQRLQAEEQQKSPGEVMDPREAAQAIFPSMARALQKYLRTTRQQHYH
SMESILQHLAFCITNSMTPKAFLERYLSAGPTLQYDKDRWLSTQWRLISEEAVTNGLRDGIVFVLKCLDF
SLVVNVKKIPFIVLSEEFIDPKSHKFVLRLQSETSV


Links Key
 Links to:   History report
  BLAST report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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