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Report for CCDS17643.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17643.1 Public Mus musculus 3 Pex11b 23 108 98 CCDS HistoryNCBI Gene:18632Re-query CCDS DB by CCDS ID:17643.1Re-query CCDS DB by GeneID:18632See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17643.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048766.14 ENSMUSP00000037962.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048766.14Link to Ensembl Protein Viewer:ENSMUSP00000037962.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000048766Re-query CCDS DB by Protein ID:ENSMUSP00000037962
Original member Current member EBI ENSMUST00000118557.7 ENSMUSP00000113365.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118557.7Link to Ensembl Protein Viewer:ENSMUSP00000113365.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118557Re-query CCDS DB by Protein ID:ENSMUSP00000113365
Original member Current member NCBI NM_001162387.1 NP_001155859.1 Accepted alive Link to Nucleotide Sequence:NM_001162387.1Link to Protein Sequence:NP_001155859.1Re-query CCDS DB by Nucleotide ID:NM_001162387Re-query CCDS DB by Protein ID:NP_001155859Link to BLAST:NP_001155859.1
Original member Current member NCBI NM_011069.3 NP_035199.3 Accepted alive Link to Nucleotide Sequence:NM_011069.3Link to Protein Sequence:NP_035199.3Re-query CCDS DB by Nucleotide ID:NM_011069Re-query CCDS DB by Protein ID:NP_035199Link to BLAST:NP_035199.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001155859.1 259 Q9Z210 259 100% 0 0
NP_035199.3 259 Q9Z210 259 100% 0 0

Chromosomal Locations for CCDS 17643.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 96635688 96635743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96636674 96636789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96637131 96637332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96643575 96643980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (780 nt):
ATGGACGCCTGGGTCCGCTTCAGTGCTCAGAGCCAAGCCCGGGAGCGGCTGTGTAGGGCCGCCCAGTATG
CCTGTTCCCTTCTCGGCCATGCTTTGCAGAGACATGGGGCTAGTCCCGAGTTACAGAAACAGATTCGACA
ACTGGAGGGTCATCTGAGCCTCGGACGAAAGTTGCTACGCCTGGGGAACTCAACAGATGCCCTGGAGTCA
GCCAAAAGGGCTGTGCACCTGTCAGATGTCGTTCTGAGATTCTGCATCACTGTCAGTCACCTCAACCGAG
CCTTGTACTTTGCCTGTGACAATGTCCTATGGGCTGGAAAGTCTGGGCTAGCTCCCCGAGTGGACCAGGA
AAAGTGGGCACAGCGTTCATTCAGATACTATCTGTTTTCCCTCATCATGAATCTGAGCCGTGATGCTTAT
GAGATTCGCCTATTGATGGAACAAGAGACTTCAGCTTACAGCAGGCGAATGAAGGTTTCTGGAGTAGGAG
TCTCAGGAGGAGTAGAAACTGTGGGACCTGGAGGACCAGGGACTCCAGGAGGAAGTCTGCCACAACTGGC
TTTGAAGTTTCGGCTCCGAATCCTGCTACTGGCTCGTGTCCTTCGAGGTCATCCCCCTCTCTTGCTGGAT
GTGCTCAGAAATGCCTGTGACCTTTTCATCCCACTGGACAAACTAGGCCTCTGGCGTTGTGGCCCTGGGA
TTGTGGGGCTGTGTGGCCTCATATCCTCCATTCTGTCTATTCTCACCCTAATCTGTCCCTGGCTACGACT
CAAGCCCTGA

Translation (259 aa):
MDAWVRFSAQSQARERLCRAAQYACSLLGHALQRHGASPELQKQIRQLEGHLSLGRKLLRLGNSTDALES
AKRAVHLSDVVLRFCITVSHLNRALYFACDNVLWAGKSGLAPRVDQEKWAQRSFRYYLFSLIMNLSRDAY
EIRLLMEQETSAYSRRMKVSGVGVSGGVETVGPGGPGTPGGSLPQLALKFRLRILLLARVLRGHPPLLLD
VLRNACDLFIPLDKLGLWRCGPGIVGLCGLISSILSILTLICPWLRLKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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