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Report for CCDS17619.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17619.1 Public Mus musculus 3 Ecm1 23 108 98 CCDS HistoryNCBI Gene:13601Re-query CCDS DB by CCDS ID:17619.1Re-query CCDS DB by GeneID:13601See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17619.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000117507.8 ENSMUSP00000112665.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117507.8Link to Ensembl Protein Viewer:ENSMUSP00000112665.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000117507Re-query CCDS DB by Protein ID:ENSMUSP00000112665
Original member NCBI NM_007899.3 NP_031925.2 Updated not alive Link to Nucleotide Sequence:NM_007899.3Link to Protein Sequence:NP_031925.2Re-query CCDS DB by Nucleotide ID:NM_007899Re-query CCDS DB by Protein ID:NP_031925
NCBI NM_007899.4 NP_031925.2 Updated not alive Link to Nucleotide Sequence:NM_007899.4Link to Protein Sequence:NP_031925.2Re-query CCDS DB by Nucleotide ID:NM_007899Re-query CCDS DB by Protein ID:NP_031925
Current member NCBI NM_007899.5 NP_031925.2 Accepted alive Link to Nucleotide Sequence:NM_007899.5Link to Protein Sequence:NP_031925.2Re-query CCDS DB by Nucleotide ID:NM_007899Re-query CCDS DB by Protein ID:NP_031925Link to BLAST:NP_031925.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031925.2 559 Q61508-1 559 100% 0 0

Chromosomal Locations for CCDS 17619.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 95734240 95734470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95734823 95734910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95735199 95735419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95735847 95736221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95736472 95736791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95737013 95737057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95737633 95737713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95737808 95737888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95738012 95738116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95738239 95738301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95739373 95739442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1680 nt):
ATGGGGACCGTATCCAGAGCAGCCTTGATCTTGGCCTGCTTGGCTCTTGCTTCTGCTGCCTCTGAGGGAG
CCTTCAAGGCTTCAGACCAGCGAGAGATGACGCCAGAGCGCCTCTTCCAGCACCTCCATGAAGTAGGTTA
TGCAGCACCCCCTTCCCCACCACAAACCCGGAGACTCCGAGTTGACCACTCTGTAACTTCTCTGCATGAC
CCTCCCCTCTTTGAGGAACAAAGAGAAGTGCAGCCCCCTTCCTCTCCAGAAGACATCCCTGTGTACGAGG
AAGACTGGCCCACTTTCCTAAACCCTAATGTAGATAAAGCTGGTCCTGCTGTCCCTCAAGAAGCCATCCC
CCTGCAGAAAGAGCAGCCCCCTCCCCAAGTCCATATTGAACAGAAGGAAATAGACCCGCCTGCCCAGCCT
CAGGAGGAGATTGTCCAGAAAGAGGTGAAGCCACACACCTTGGCGGGCCAGCTCCCTCCAGAGCCCCGGA
CTTGGAATCCAGCCCGTCACTGCCAGCAGGGACGGAGAGGTGTCTGGGGCCACCGGCTGGATGGCTTCCC
TCCTGGACGGCCTTCTCCAGACAATCTGAAGCAGATCTGCCTTCCTGAGCGTCAGCATGTGATCTACGGC
CCCTGGAACCTGCCGCAGACTGGCTACTCTCACCTTAGTCGCCAGGGAGAGACCCTCAATGTGCTGGAGA
CCGGATACTCCCGCTGCTGTCGCTGCCGCAGCGACACAAACCGCCTAGACTGTTTGAAGCTTGTGTGGGA
GGATGCAATGACCCAATTTTGTGAGGCCGAATTCTCTGTCAAGACCCGCCCCCACCTGTGCTGCAGACTG
CGTGGGGAGGAGCGATTCTCTTGCTTCCAGAAGGAAGCTCCTCGCCCAGACTACCTGCTCCGACCCTGCC
CCGTCCACCAGAATGGCATGTCCTCAGGGCCCCAGTTGCCTTTCCCCCCGGGGTTGCCCACACCGGACAA
TGTCAAAAACATCTGTCTCCTGAGACGCTTCCGCGCCGTGCCACGCAACCTCCCAGCTACTGACGCCATC
CAGAGGCAGCTGCAGGCTCTGACTCGGCTGGAGACGGAGTTCCAGCGCTGCTGCCGCCAGGGCCACAACC
ACACTTGCACATGGAAGGCCTGGGAGGGTACCCTGGATGGATACTGCGAGCGGGAGCTGGCTATAAAGAC
CCACCCCCACTCGTGCTGCCACTACCCTCCTAGTCCTGCCCGTGATGAGTGCTTCGCCCACCTAGCTCCC
TATCCCAACTATGACCGGGATATCTTGACCCTTGACCTCAGCCGAGTCACCCCCAACCTCATGGGCCAGC
TCTGTGGAAGTGGAAGGGTCCTTAGCAAGCATAAACAGATTCCGGGGCTGATCCAGAATATGACCATCCG
CTGCTGCGAGCTTCCATATCCAGAACAGGCCTGCTGCGGCGAAGAGGAGAAACTGGCCTTCATCGAGAAC
CTCTGTGGTCCCCGGAGGAATTCGTGGAAAGACCCTGCCCTCTGCTGTGACCTGTCTCCTGAAGATAAGC
AAATCAACTGCTTCAATACCAACTACCTGAGGAACGTGGCTTTAGTGGCTGGAGACACTGGGAATGCCAC
TGGCTTGGGGGAGCAGGGCCCAACTCGGGGAACAGATGCCAACCCCGCCCCTGGGTCCAAGGAAGAATGA

Translation (559 aa):
MGTVSRAALILACLALASAASEGAFKASDQREMTPERLFQHLHEVGYAAPPSPPQTRRLRVDHSVTSLHD
PPLFEEQREVQPPSSPEDIPVYEEDWPTFLNPNVDKAGPAVPQEAIPLQKEQPPPQVHIEQKEIDPPAQP
QEEIVQKEVKPHTLAGQLPPEPRTWNPARHCQQGRRGVWGHRLDGFPPGRPSPDNLKQICLPERQHVIYG
PWNLPQTGYSHLSRQGETLNVLETGYSRCCRCRSDTNRLDCLKLVWEDAMTQFCEAEFSVKTRPHLCCRL
RGEERFSCFQKEAPRPDYLLRPCPVHQNGMSSGPQLPFPPGLPTPDNVKNICLLRRFRAVPRNLPATDAI
QRQLQALTRLETEFQRCCRQGHNHTCTWKAWEGTLDGYCERELAIKTHPHSCCHYPPSPARDECFAHLAP
YPNYDRDILTLDLSRVTPNLMGQLCGSGRVLSKHKQIPGLIQNMTIRCCELPYPEQACCGEEEKLAFIEN
LCGPRRNSWKDPALCCDLSPEDKQINCFNTNYLRNVALVAGDTGNATGLGEQGPTRGTDANPAPGSKEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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