NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS17609.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17609.2 Public Mus musculus 3 Bnipl 23 108 98 CCDS HistoryNCBI Gene:171388Re-query CCDS DB by CCDS ID:17609.2Re-query CCDS DB by GeneID:171388See the combined annotation on chromosome 3 in Sequence Viewer

Public Note for CCDS 17609.2
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 17609.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107195.8 ENSMUSP00000102813.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107195.8Link to Ensembl Protein Viewer:ENSMUSP00000102813.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107195Re-query CCDS DB by Protein ID:ENSMUSP00000102813
Original member Current member NCBI NM_134253.2 NP_599014.2 Accepted alive Link to Nucleotide Sequence:NM_134253.2Link to Protein Sequence:NP_599014.2Re-query CCDS DB by Nucleotide ID:NM_134253Re-query CCDS DB by Protein ID:NP_599014Link to BLAST:NP_599014.2

Chromosomal Locations for CCDS 17609.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 95241825 95241861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95242732 95242830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95242998 95243084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95244142 95244273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95244985 95245087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95245650 95245832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95248576 95248800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95249806 95249870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95250167 95250262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95250965 95251008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1071 nt):
ATGGGGACCAGGCAAGAAACAGGAAGAGAGACGTTAGAAGGAGGGGCTAAGGAGAAGGCAGGAGCCTCAG
AACCAGGAGCAACCATGAAACTTGGAGAGCTGGAGCTAAGAGAGGAGTGGCAAGATGAAGAGTTTCCTAG
ATTGCTTCCTGAGGAACCTGGCTCACCTGGAGACCCTGAAGACCCTCAGAGAGGCTCACAGGCAGGCACC
CCCAGCAGTCTGGCCTTGTGTGGCCAGCGCCCTATGCGGAAGCGTCTTTCCGCCCCAGAATGGCAGCTGA
GTCTGACTGAGGGAACAGGAGAAAACGGAGCCTCTCCCACCCGCTCTGCGTCTTCCTCTTCTGCTGGCAG
CTTGGACCTGGAGGTGGATGAGTTGGAGACACCATCAGACTCTGAGCAGCTGGACAGCGGACATGAGTTT
GAATGGGAAGATGACTTGCCCCGGGCAGAGGGCCTGGGGGCCAGTGAGGCAGCAGAAAGACTGGGCCGGG
GATGCGTGTGCGATGTGGCTGGAGAAGACGGTCATCGCTGGAGAGTGTTTCGAACAGGACAACGAGAGCA
GCGAGTGGACATGACCATCATTGAGCCCTATAAGAAAGTCTTATCTCATGGAGGTTACCATGGTGATGGC
CTCAATGCTGTCATCCTCTTTGCTTCCTGCTATCTACCCCGAAGCAGCATCCCCAACTACACCTACATCA
TGGAACACTTATTCAGGTATATGGTGGGAACTTTGGAGCTGCTGGTAGCTGAAAACTATCTGCTTGTTCA
CTTGAGTGGAGGCACCAGCAGGGCCCAAGTGCCCCCTCTGAGCTGGATCCGGCAGTGTTACCGTACCTTG
GACAGGAGGCTTCGGAAAAACCTTCGCGCCCTGGTGGTCGTCCACGCTACGTGGTATGTGAAGGCCTTCC
TGGCACTGGTTCGGCCCTTCATCAGCTCCAAGTTCACACGAAAGATCCGCTTTCTGGACAGCCTCGGAGA
GCTGGCCCAGCTCATCTCGCTAGAGCAAGTGCACATACCGGAAGTTGTCAGACAGCTGGACCGGGATCTG
CATGGCTCGAAAGGCACCTAA

Translation (356 aa):
MGTRQETGRETLEGGAKEKAGASEPGATMKLGELELREEWQDEEFPRLLPEEPGSPGDPEDPQRGSQAGT
PSSLALCGQRPMRKRLSAPEWQLSLTEGTGENGASPTRSASSSSAGSLDLEVDELETPSDSEQLDSGHEF
EWEDDLPRAEGLGASEAAERLGRGCVCDVAGEDGHRWRVFRTGQREQRVDMTIIEPYKKVLSHGGYHGDG
LNAVILFASCYLPRSSIPNYTYIMEHLFRYMVGTLELLVAENYLLVHLSGGTSRAQVPPLSWIRQCYRTL
DRRLRKNLRALVVVHATWYVKAFLALVRPFISSKFTRKIRFLDSLGELAQLISLEQVHIPEVVRQLDRDL
HGSKGT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH