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Report for CCDS17608.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17608.1 Public Mus musculus 3 Gm128 23 108 98 CCDS HistoryNCBI Gene:229588Re-query CCDS DB by CCDS ID:17608.1Re-query CCDS DB by GeneID:229588See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 17608.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090815.5 ENSMUSP00000088324.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090815.5Link to Ensembl Protein Viewer:ENSMUSP00000088324.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000090815Re-query CCDS DB by Protein ID:ENSMUSP00000088324
Original member Current member NCBI NM_001024841.3 NP_001020012.1 Accepted alive Link to Nucleotide Sequence:NM_001024841.3Link to Protein Sequence:NP_001020012.1Re-query CCDS DB by Nucleotide ID:NM_001024841Re-query CCDS DB by Protein ID:NP_001020012Link to BLAST:NP_001020012.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001020012.1 350 Q569E4 350 100% 0 0

Chromosomal Locations for CCDS 17608.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 95237209 95237229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95239950 95240981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1053 nt):
ATGGTCCCCGCCGCCTGCATGCTGCTCTGGGCCCTGCTGCTAAGTCTGGAGTACCGGGCGGCGGGGGCCG
AAGACCAAACGACTACCCCGACCGCTACCACGATTGGGATGCAGCGGGTCAGCTTCCGCTTTGGGGGCCC
AGCCCGCAGCCTCCACAGCACAAACCCCACCGCCCGGACCACTGTACCCGGGAAGCTGAGGGTAACCCTG
GAGGATGAAAATGATGCCCTGGCCACTGCTGACCGCCTGGCCCTCCCGGCAGCTGCTGAGCTCCTGTCCA
CCGTGACAGGCTATAGCCGGTCATCAGTGCCCAGCCCCAGTGACTGGGAGGAGGATGGCTCCTTGGAAGA
GGGGGTGGTTGATACCAGAAAAACCACCAACGGCCCTGTAAGTTTATTTTCGACCACCAATACTGTGGGA
AGTTCCGGCACTACCGGGAGGTTTCTAGCCAATAGCCAGGAGCGAGAGATTAAGCTGACCACTGACGTGC
GGTCCCTCAGTTCAAAGACTACTGTGGTGGACCTGTCTTCTGAGTCCACCCTGCAACAGTGGTCGACACC
CGGGTCCACCCCATCCCCATGGCTAAAACCCTCATTCACAGCCATGCCATCTCCTGAGGATCTGCGGGTA
GTACTGATGCCTTGGGGCCCTTGGCATTGCCACTGTAAGTCAGGCACTATGAGTAGGAGCCGGGCTGGAA
AGCTGCATGGCCTTTCTGGGCGCCTTCGAGTTGGGGCACTGAATGAACTCCGCACAGAACACCGGCCTTG
CACCTACCAGTTGTGCGCTTGCAACAGGCACCTGGAGGAATGCCCTCTGGACTCGAGCCTCTGTTCTGAC
CATAGCTGCAGCTCTCGTGCTCCCTTTCAGAGCAGCACCACTTCTCTGGTTCCTGTCCACCTGAGACGCA
GACCCATCCTGCCACCCACTAGCCCGAGCCCCAGCCCAGCTCTTGCCTTTTGGAAACGTGTCAGGATTGG
CCTGGAGGATATCTGGAACAGCCTTTCTTCAGTGTTCACAGAGACTCAACCAGTAGAAAGAATCCAGAGG
TAA

Translation (350 aa):
MVPAACMLLWALLLSLEYRAAGAEDQTTTPTATTIGMQRVSFRFGGPARSLHSTNPTARTTVPGKLRVTL
EDENDALATADRLALPAAAELLSTVTGYSRSSVPSPSDWEEDGSLEEGVVDTRKTTNGPVSLFSTTNTVG
SSGTTGRFLANSQEREIKLTTDVRSLSSKTTVVDLSSESTLQQWSTPGSTPSPWLKPSFTAMPSPEDLRV
VLMPWGPWHCHCKSGTMSRSRAGKLHGLSGRLRVGALNELRTEHRPCTYQLCACNRHLEECPLDSSLCSD
HSCSSRAPFQSSTTSLVPVHLRRRPILPPTSPSPSPALAFWKRVRIGLEDIWNSLSSVFTETQPVERIQR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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