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Report for CCDS17553.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17553.1 Public Mus musculus 3 Sprr2h 23 108 98 CCDS HistoryNCBI Gene:20762Re-query CCDS DB by CCDS ID:17553.1Re-query CCDS DB by GeneID:20762See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17553.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059845.1 ENSMUSP00000053849.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059845.1Link to Ensembl Protein Viewer:ENSMUSP00000053849.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000059845Re-query CCDS DB by Protein ID:ENSMUSP00000053849
Original member Current member NCBI NM_011474.4 NP_035604.1 Accepted alive Link to Nucleotide Sequence:NM_011474.4Link to Protein Sequence:NP_035604.1Re-query CCDS DB by Nucleotide ID:NM_011474Re-query CCDS DB by Protein ID:NP_035604Link to BLAST:NP_035604.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035604.1 108 O70559 108 100% 0 0

Chromosomal Locations for CCDS 17553.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 92386632 92386958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (327 nt):
ATGTCTTACCAACAGCAGCAGTGCAAGCAGCCTTGCCAGCCTCCTCCTGTGTGCCCACCCCCTCAGTGCC
CAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCACTGAGCCTTGTCCTCC
CCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAG
CCTTGTCCTCCCCCAAAGTGCACTGAGCCATGTCCCCCTCCCTCATACCAGCAGAAATGCCCTTCTGTGC
AACCTTCTCCACCATGTCAACAGAAGTGTCCACCCAAGAACAAATGA

Translation (108 aa):
MSYQQQQCKQPCQPPPVCPPPQCPEPCPPPKCPEPCPPPKCTEPCPPPKCPEPCPPPKCPEPCPPPKCPE
PCPPPKCTEPCPPPSYQQKCPSVQPSPPCQQKCPPKNK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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