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Report for CCDS17527.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17527.1 Public Mus musculus 3 Slc27a3 23 108 98 CCDS HistoryNCBI Gene:26568Re-query CCDS DB by CCDS ID:17527.1Re-query CCDS DB by GeneID:26568See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17527.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029541.11 ENSMUSP00000029541.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029541.11Link to Ensembl Protein Viewer:ENSMUSP00000029541.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000029541Re-query CCDS DB by Protein ID:ENSMUSP00000029541
Original member NCBI NM_011988.3 NP_036118.2 Updated not alive Link to Nucleotide Sequence:NM_011988.3Link to Protein Sequence:NP_036118.2Re-query CCDS DB by Nucleotide ID:NM_011988Re-query CCDS DB by Protein ID:NP_036118
Current member NCBI NM_011988.4 NP_036118.2 Accepted alive Link to Nucleotide Sequence:NM_011988.4Link to Protein Sequence:NP_036118.2Re-query CCDS DB by Nucleotide ID:NM_011988Re-query CCDS DB by Protein ID:NP_036118Link to BLAST:NP_036118.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036118.2 667 O88561-1 667 99.8501% 0 1

Chromosomal Locations for CCDS 17527.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 90385357 90385533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90386250 90386380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90386480 90386577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90386748 90386946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90387064 90387154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90387255 90387449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90387636 90387760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90388328 90388486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90388690 90388899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90389172 90389790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2004 nt):
ATGGCGGCCCTCCTGCTGCTGCTGCCCTTACTCTTGCTCCTGCCTCTGCTGCTGAAGCTAGACGTCTGGC
CTCAGCTGCGCTGGCTGCCGGCCGACCTGGCCTTCACAGTTCGCGCCCTCCGCTGCAAAAGGGCCCTTCG
AGCACGCGCGCTGGCCGCAGCGGCCGCCGACCCCGAAAGCTCTGAGAGCGGGTGCAGTCTGGCCTGGCGT
CTCGCGTACCTGGCCCGGGAGCAGCCGACACACACCTTCCTCATCCACGGCGCGCAGCGCTTTAGCTACG
CGGAGGCTGAGCGCGAGAGCAACCGGATTGCTCGCGCCTTTCTGCGCGCACGGGGCTGGACCGGGGGCCG
CCGAGGCTCGGGCAGGGGCAGCACTGAGGAAGGCGCACGCGTGGCGCCTCCGGCTGGAGATGCGGCTGCT
AGAGGGACGACCGCGCCCCCTCTGGCACCCGGGGCGACCGTGGCGCTGCTCCTCCCAGCGGGCCCGGATT
TCCTTTGGATTTGGTTCGGACTGGCCAAAGCTGGCCTGCGCACGGCCTTTGTGCCCACCGCTTTACGCCG
AGGACCCCTGCTGCACTGCCTCCGCAGCTGCGGTGCGAGTGCGCTCGTGCTGGCCACAGAGTTCCTGGAG
TCCCTGGAGCCGGACCTGCCGGCCTTGAGAGCCATGGGGCTCCACCTATGGGCGACGGGCCCTGAAACTA
ATGTAGCTGGAATCAGCAATTTGCTATCGGAAGCAGCAGACCAAGTGGATGAGCCAGTGCCGGGGTACCT
CTCTGCCCCCCAGAACATAATGGACACCTGCCTGTACATCTTCACCTCTGGCACTACTGGCCTGCCCAAG
GCTGCTCGAATCAGTCATCTGAAGGTTCTACAGTGCCAGGGATTCTACCATCTGTGTGGAGTCCACCAGG
AGGACGTGATCTACCTCGCACTCCCACTGTACCACATGTCTGGCTCCCTTCTGGGCATTGTGGGCTGCTT
GGGCATTGGGGCCACCGTGGTGCTGAAACCCAAGTTCTCAGCTAGCCAGTTCTGGGACGATTGCCAGAAA
CACAGGGTGACAGTGTTCCAGTACATTGGGGAGTTGTGCCGATACCTCGTCAACCAGCCCCCGAGCAAGG
CAGAGTGTGACCATAAGGTGCGCTTGGCAGTGGGCAGTGGGTTGCGCCCAGACACCTGGGAGCGTTTCCT
GCGGCGATTTGGACCTCTGCAGATACTGGAGACGTATGGCATGACAGAGGGCAACGTAGCTACGTTCAAT
TACACAGGACGGCAGGGTGCAGTGGGGCGAGCTTCCTGGCTTTACAAGCACATCTTCCCCTTCTCCTTGA
TTCGATACGATGTCATGACAGGGGAGCCTATTCGGAATGCCCAGGGGCACTGCATGACCACATCTCCAGG
TGAGCCAGGCCTACTGGTGGCCCCAGTGAGCCAGCAGTCCCCCTTCCTGGGCTATGCTGGGGCTCCGGAG
CTGGCCAAGGACAAGCTGCTGAAGGATGTCTTCTGGTCTGGGGACGTTTTCTTCAATACTGGGGACCTCT
TGGTCTGTGATGAGCAAGGCTTTCTTCACTTCCACGATCGTACTGGAGACACCTTCAGGTGGAAGGGAGA
GAATGTGGCCACAACTGAAGTGGCTGAGGTCTTGGAGACCCTGGACTTCCTTCAGGAGGTGAACATCTAT
GGAGTCACGGTGCCAGGGCACGAAGGCAGGGCAGGCATGGCGGCCTTGGCTCTGCGGCCCCCGCAGGCTC
TGAACCTGGTGCAGCTCTACAGCCATGTTTCTGAGAACTTGCCACCGTATGCCCGACCTCGGTTTCTCAG
GCTCCAGGAATCTTTGGCCACTACTGAGACCTTCAAACAGCAGAAGGTTAGGATGGCCAATGAGGGCTTT
GACCCCAGTGTACTGTCTGACCCACTCTATGTTCTGGACCAAGATATAGGGGCCTACCTGCCCCTCACAC
CTGCCCGGTACAGTGCCCTCCTGTCTGGAGACCTTCGAATCTGA

Translation (667 aa):
MAALLLLLPLLLLLPLLLKLDVWPQLRWLPADLAFTVRALRCKRALRARALAAAAADPESSESGCSLAWR
LAYLAREQPTHTFLIHGAQRFSYAEAERESNRIARAFLRARGWTGGRRGSGRGSTEEGARVAPPAGDAAA
RGTTAPPLAPGATVALLLPAGPDFLWIWFGLAKAGLRTAFVPTALRRGPLLHCLRSCGASALVLATEFLE
SLEPDLPALRAMGLHLWATGPETNVAGISNLLSEAADQVDEPVPGYLSAPQNIMDTCLYIFTSGTTGLPK
AARISHLKVLQCQGFYHLCGVHQEDVIYLALPLYHMSGSLLGIVGCLGIGATVVLKPKFSASQFWDDCQK
HRVTVFQYIGELCRYLVNQPPSKAECDHKVRLAVGSGLRPDTWERFLRRFGPLQILETYGMTEGNVATFN
YTGRQGAVGRASWLYKHIFPFSLIRYDVMTGEPIRNAQGHCMTTSPGEPGLLVAPVSQQSPFLGYAGAPE
LAKDKLLKDVFWSGDVFFNTGDLLVCDEQGFLHFHDRTGDTFRWKGENVATTEVAEVLETLDFLQEVNIY
GVTVPGHEGRAGMAALALRPPQALNLVQLYSHVSENLPPYARPRFLRLQESLATTETFKQQKVRMANEGF
DPSVLSDPLYVLDQDIGAYLPLTPARYSALLSGDLRI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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