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Report for CCDS17496.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17496.1 Public Mus musculus 3 Muc1 23 108 98 CCDS HistoryNCBI Gene:17829Re-query CCDS DB by CCDS ID:17496.1Re-query CCDS DB by GeneID:17829See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17496.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041142.3 ENSMUSP00000041963.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041142.3Link to Ensembl Protein Viewer:ENSMUSP00000041963.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000041142Re-query CCDS DB by Protein ID:ENSMUSP00000041963
Original member Current member NCBI NM_013605.2 NP_038633.1 Accepted alive Link to Nucleotide Sequence:NM_013605.2Link to Protein Sequence:NP_038633.1Re-query CCDS DB by Nucleotide ID:NM_013605Re-query CCDS DB by Protein ID:NP_038633Link to BLAST:NP_038633.1

Chromosomal Locations for CCDS 17496.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 89229120 89229177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89229911 89231214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89231313 89231365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89231501 89231634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89231763 89231884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89231966 89232115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89233024 89233098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1896 nt):
ATGACCCCGGGCATTCGGGCTCCTTTCTTCCTGCTGCTACTTCTAGCAAGTCTAAAAGGTTTTCTTGCCC
TTCCAAGTGAGGAAAACAGTGTCACCTCATCTCAGGACACCAGCAGTTCCTTAGCATCGACTACCACTCC
AGTCCACAGCAGCAACTCAGACCCAGCCACCAGACCTCCAGGGGACTCCACCAGCTCTCCAGTCCAGAGT
AGCACCTCTTCTCCAGCCACCAGAGCTCCTGAAGACTCTACCAGTACTGCAGTCCTCAGTGGCACCTCCT
CCCCAGCCACCACAGCTCCAGTGAACTCCGCCAGCTCTCCAGTAGCCCATGGTGACACCTCTTCCCCAGC
CACTAGCCTTTCAAAAGACTCCAACAGCTCTCCAGTAGTCCACAGTGGCACCTCTTCAGCTCCGGCCACC
ACAGCTCCAGTGGATTCCACCAGCTCTCCAGTAGTCCACGGTGGTACCTCGTCCCCAGCCACCAGCCCTC
CAGGGGACTCCACCAGCTCTCCAGACCATAGTAGCACCTCTTCTCCAGCCACCAGAGCTCCCGAAGACTC
TACCAGTACTGCAGTCCTCAGTGGCACCTCCTCCCCAGCCACCACAGCTCCAGTGGACTCCACCAGCTCT
CCAGTAGCCCATGATGACACCTCTTCCCCAGCCACTAGCCTTTCAGAAGACTCCGCCAGCTCTCCAGTAG
CCCACGGTGGCACCTCTTCTCCAGCCACCAGCCCTCTAAGGGACTCCACCAGTTCTCCAGTCCACAGTAG
TGCCTCCATCCAAAACATCAAGACTACATCAGACTTAGCTAGCACTCCAGACCACAATGGCACCTCAGTC
ACAACTACCAGCTCTGCACTGGGCTCAGCCACCAGTCCAGACCACAGTGGTACCTCAACTACAACTAACA
GCTCTGAATCAGTCTTGGCCACCACTCCAGTTTACAGTAGCATGCCATTCTCTACTACCAAAGTGACGTC
AGGCTCAGCTATCATTCCAGACCACAATGGCTCCTCGGTGCTACCTACCAGTTCTGTGTTGGGCTCAGCT
ACCAGTCTAGTCTATAATACCTCTGCAATAGCTACAACTCCAGTCAGCAATGGCACTCAGCCTTCAGTGC
CAAGTCAATACCCTGTTTCTCCTACCATGGCCACCACCTCCAGCCACAGCACTATTGCCAGCAGCTCTTA
CTATAGCACAGTACCATTTTCTACCTTCTCCAGTAACAGTTCACCCCAGTTGTCTGTTGGGGTCTCCTTC
TTCTTCTTGTCTTTTTACATTCAAAACCACCCATTTAATTCTTCTCTGGAAGACCCCAGCTCCAACTACT
ACCAAGAACTGAAGAGGAACATTTCTGGATTGTTTCTGCAGATTTTTAACGGAGATTTTCTGGGGATCTC
TAGCATCAAGTTCAGGTCAGGCTCCGTGGTGGTAGAATCGACTGTGGTTTTCCGGGAGGGTACTTTTAGT
GCCTCTGACGTGAAGTCACAGCTTATACAGCATAAGAAGGAGGCAGATGACTATAATCTGACTATTTCAG
AAGTCAAAGTGAATGAGATGCAGTTCCCTCCCTCTGCCCAGTCCCGGCCGGGGGTACCAGGCTGGGGCAT
TGCCCTGCTGGTGCTGGTCTGTATTTTGGTTGCTTTGGCTATCGTCTATTTCCTTGCCCTGGCAGTGTGC
CAGTGCCGCCGAAAGAGCTATGGGCAGCTGGACATCTTTCCAACCCAGGACACCTACCATCCTATGAGTG
AATACCCTACCTACCACACTCACGGACGCTACGTGCCCCCTGGCAGTACCAAGCGTAGCCCCTATGAGGA
GGTTTCGGCAGGTAATGGCAGTAGCAGTCTCTCTTATACCAACCCAGCTGTGGTGACCACTTCTGCCAAC
TTGTAG

Translation (631 aa):
MTPGIRAPFFLLLLLASLKGFLALPSEENSVTSSQDTSSSLASTTTPVHSSNSDPATRPPGDSTSSPVQS
STSSPATRAPEDSTSTAVLSGTSSPATTAPVNSASSPVAHGDTSSPATSLSKDSNSSPVVHSGTSSAPAT
TAPVDSTSSPVVHGGTSSPATSPPGDSTSSPDHSSTSSPATRAPEDSTSTAVLSGTSSPATTAPVDSTSS
PVAHDDTSSPATSLSEDSASSPVAHGGTSSPATSPLRDSTSSPVHSSASIQNIKTTSDLASTPDHNGTSV
TTTSSALGSATSPDHSGTSTTTNSSESVLATTPVYSSMPFSTTKVTSGSAIIPDHNGSSVLPTSSVLGSA
TSLVYNTSAIATTPVSNGTQPSVPSQYPVSPTMATTSSHSTIASSSYYSTVPFSTFSSNSSPQLSVGVSF
FFLSFYIQNHPFNSSLEDPSSNYYQELKRNISGLFLQIFNGDFLGISSIKFRSGSVVVESTVVFREGTFS
ASDVKSQLIQHKKEADDYNLTISEVKVNEMQFPPSAQSRPGVPGWGIALLVLVCILVALAIVYFLALAVC
QCRRKSYGQLDIFPTQDTYHPMSEYPTYHTHGRYVPPGSTKRSPYEEVSAGNGSSSLSYTNPAVVTTSAN
L


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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