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Report for CCDS17442.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17442.2 Public Mus musculus 3 Fhip1a 23 108 98 CCDS HistoryNCBI Gene:229488Re-query CCDS DB by CCDS ID:17442.2Re-query CCDS DB by GeneID:229488See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 17442.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094148.5 ENSMUSP00000091700.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094148.5Link to Ensembl Protein Viewer:ENSMUSP00000091700.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000094148Re-query CCDS DB by Protein ID:ENSMUSP00000091700
Original member Current member EBI ENSMUST00000118408.7 ENSMUSP00000113235.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118408.7Link to Ensembl Protein Viewer:ENSMUSP00000113235.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118408Re-query CCDS DB by Protein ID:ENSMUSP00000113235
Original member Current member NCBI NM_172682.3 NP_766270.2 Accepted alive Link to Nucleotide Sequence:NM_172682.3Link to Protein Sequence:NP_766270.2Re-query CCDS DB by Nucleotide ID:NM_172682Re-query CCDS DB by Protein ID:NP_766270Link to BLAST:NP_766270.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766270.2 1081 Q505K2 1081 100% 0 0

Chromosomal Locations for CCDS 17442.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 85660965 85661218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 85665353 85665491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 85665788 85665966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 85672223 85673479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 85676071 85676261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 85683580 85683659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 85688431 85688598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 85720416 85720502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 85722392 85722550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 85730259 85730885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 85741151 85741255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3246 nt):
ATGATGTCATCGGTTTCTACAGAAAGCAAACTCCAGCAGGCTGTGAGCCTGAAGGGAGTTGACCCAGAAA
CATGCATGATTGTGTTTAAGAACCACTGGGCACAGGTTGTGAAAATCTTAGAGAAGCATGACCCCTTGAA
GAACACCCAGGCAAAATATGGGTCCATCCCCCCAGATGAGGCCAGTGCTGTGCAGAACTATGTAGAACAC
ATGCTTTTCCTGCTAATCGAAGAGCAAGCCAAGGATGCTGCGATGGGGCCAATCCTGGAATTTGTGGTCT
GCGAGAACATCATGGAAAAGCTCTTCCTTTGGAGCTTGAGACGAGAATTCACTGATGAAACCAAACTTGA
GCAGCTAAAGATGTATGAGATGCTGGTCACTCAGTCCTACCAGCCTCTGCTGCACCACAAGCCCATCCTG
AAGCCCCTCATGATGTTGCTGAGCTCCTGTTCGGGGACAGCCACCCCAGCTGTGGAGGGAAAGCTAGTTG
TCCTGCTCAATCAGCTCTGCTCCATCCTTGCCAAAGATCCATCCATCCTGGAACTCTTCTTCCACACCAG
TGAGGACCAAGGGGCTGCCAACTTCCTCATTTTCTCTCTTCTGATACCCTTCATTCATCGAGAGGGCACA
GTAGGCCAGCAAGCAAGAGATGCTTTGCTATTTATCATGTCTCTCTCTGCTGAGAACAGCATGGTGGCCA
ATCACATTGTGGAAAATACCTACTTCTGTCCCGTGCTTGCAACGGGACTCAGTGGCCTGTACTCTTCGCT
GCCCACAAAGCTGGAAGAGAAGGGTGAGGACTGGCACTGCATTCTGAAGGACGACTGGCTCCTGCTGCCT
GCCCTCGTGCAGTTCATGAACTCGCTGGAGTTCTGTAACGCAGTCATCCAGGTGGCTCACCCCTTGATCC
GCACTCAGCTCGTCAGCTACATTTACAATGGATTTTTGGTACCAGTATTGGCTCCTGCACTCCATAAGGT
GACGGTGGAGGAGGTCATGACCACAACAGCATACCTGGACCTCTTCCTGCGCAGCATCTCTGAGCCGGCG
CTCCTGGAGATCTTCCTCCGCTTCATCCTCTTGCACCGGCATGAGAACGTTCACATCCTGGACACCCTCA
CCAGCCGGATCAACACCCCTTTTCGGCTTTGTGTGGTGTCCTTGGCGCTGTTCAGAACTCTCATCGGCTT
ACACTGTGAAGATGTGATGTTACAGCTAGTTTTAAGGTATCTGGTCCCCTGCAATCACATGATGCTGAGT
CAAAGGTGGGCTGTGAAGGAGAGAGACTGTTACTCCGTGTCCGCTGCCAAGCTGCTTGCCTTGACCCCTG
TCTGTTGTGCCAGTGGCATCACTTTGACACTTGGGAACCAAGAAAGGGATTATATTCTCTGGTCCAAGTG
TATGCATGATGGCTCAGGATCTGAGGAGCAGCTGCTGCCAGAGACACCCTGCTCGCCCTCTTCACCTTCC
CCTCCTCCCCCACCCGCCCCAGCAGCCTGCATTGTGGAGTATGGGAAGGCCCTGGACATCAGCTACCTGC
AGTATCTGTGGGAGGCCCACACCAACATCCTCCACTGCATGAGGGACTGCAGAGTGTGGTCAGCCCTCTA
TGATGGGGACTCACCTGACCCTGAGACCTTTCTGCAGAGTCTGTCAGAGGAGAGCCGAGAAAACTCAGGT
CACCCAGAGGCCAGACTCCCACAGCAGAGTGTTAGGACTTCAGGACAGACAAAGGACAAGAGCCAGTCAG
AGCTAGAATGGGATGACAGCTACGACACTGGTATCTCTTCAGGGGCAGATGTGGGCTCCCCCGGGCCTGA
TGACGAGGTGGAGACCCCGGCCCCACCAGCACCTATTGATCCCCCCAAACACATCCAAGAGATGAAGAAG
AACGCCATCCTCCTCTTCAAGGGGTCCTACATTGAGGAGTCAGACTTCCAGGATGACGTGATGGTATACA
GGCTATGTGCTGAGAAGGACACAGAGGACACCACAGAGCCACAGAAGGACACTTCAGAGCCGCAGGGGGA
CACCTTGGAGCCACTGGAGGACACTTCGGAGCAGCAGGAGGACACCTCAGAGCAGTTGGAGGACACCTCA
GAGCTACAGGAGGACACTGCGGAGCCGCAGGGGGACACTGCAGACCCAACCGCTGAGGCTCAGCCCAAGC
TCCAGCCGGAAGCCCAGAGTCTCCCCACGAGCAATGGACCTCTCTCTAGTCCCGATCCTGAGACAGAGTC
ACAACCCAGCAGGGAGAGTTCAGACCTGTGTCAGAACACGTTCTCAGAAGCCAAGCCAGAGAATGAGCCT
GGCGTAGCCTTAGCATTAGACTCGGAGTTGATAGCCACCACGTTTGAGGCGGAACCCCAGTCAGAATTGG
CAGTTGTCAGCACGGAGAGTGAAGACTTCATTGCACAGTACGACCAGATCATTCAAGAACTGGACTCTGG
CACTGAGGGCTTGACGGAGCAGAGCATCCCTATCTCAGAGCCCTCACTTCTTACACAGCAGGAAGAAAGG
AGGGAAGAGTGCAAAGAGGAGGAGGACGATGACTTCGACTCCCTCATGGCGGCCACGCCTGCCGTGGAGG
CCGGGTCATCCCCATTTGGTGTTGGAGAGGATACTGCCTTTAGCAGCCGCCATCCCGTGAGGACTCAGAG
TACGCCGTTCACAGGCCCATTCATCAGCGTGGTCCTGTCAAAGCTGGAGAACATGCTGGAGAACTCTCTG
CATGTCAACTTGCTTCTCATCGGCATCATCACCCAGCTGGCCAGCTACCCACAGCCGCTCCTTCGCTCCT
TCCTCCTCAACACCAACATGGTCTTCCAGCCCAGCGTCCGCTCGCTCTACCAGGTCCTTGCATCGGTGAA
AAACAAGATCGAGCAGTTTGCTTCTGTGGAGAGAGACTTCCCAGGCCTCCTCATCCAAGCTCAGCAGTAC
CTGCTCTTCAGGGTGGACATGTCTGACATGGCCCCTGCGGCACTCACCAAAGATCCCATTCAGGAGATCT
CCAGGCCAGAAAGTGACAAGACCCTTTTGGATGGCCCTCCACGTGTGCTTCAGCCCTTCCTAGGCAACAG
AGCCAAGGTGACCAGGGCACCCCCAAACCTGCCTCTGCCAGTGAAGAACACCATGCTGGCTGCTGCTCTC
TTCCCAGAGTTCCTGAAGGAGCTGGCAGCCTTGGCCCAAGAACACTCCATTCTGTGTTACAAGATCCTGG
GAGACTTTGAAGACTCTTGCTGTTAG

Translation (1081 aa):
MMSSVSTESKLQQAVSLKGVDPETCMIVFKNHWAQVVKILEKHDPLKNTQAKYGSIPPDEASAVQNYVEH
MLFLLIEEQAKDAAMGPILEFVVCENIMEKLFLWSLRREFTDETKLEQLKMYEMLVTQSYQPLLHHKPIL
KPLMMLLSSCSGTATPAVEGKLVVLLNQLCSILAKDPSILELFFHTSEDQGAANFLIFSLLIPFIHREGT
VGQQARDALLFIMSLSAENSMVANHIVENTYFCPVLATGLSGLYSSLPTKLEEKGEDWHCILKDDWLLLP
ALVQFMNSLEFCNAVIQVAHPLIRTQLVSYIYNGFLVPVLAPALHKVTVEEVMTTTAYLDLFLRSISEPA
LLEIFLRFILLHRHENVHILDTLTSRINTPFRLCVVSLALFRTLIGLHCEDVMLQLVLRYLVPCNHMMLS
QRWAVKERDCYSVSAAKLLALTPVCCASGITLTLGNQERDYILWSKCMHDGSGSEEQLLPETPCSPSSPS
PPPPPAPAACIVEYGKALDISYLQYLWEAHTNILHCMRDCRVWSALYDGDSPDPETFLQSLSEESRENSG
HPEARLPQQSVRTSGQTKDKSQSELEWDDSYDTGISSGADVGSPGPDDEVETPAPPAPIDPPKHIQEMKK
NAILLFKGSYIEESDFQDDVMVYRLCAEKDTEDTTEPQKDTSEPQGDTLEPLEDTSEQQEDTSEQLEDTS
ELQEDTAEPQGDTADPTAEAQPKLQPEAQSLPTSNGPLSSPDPETESQPSRESSDLCQNTFSEAKPENEP
GVALALDSELIATTFEAEPQSELAVVSTESEDFIAQYDQIIQELDSGTEGLTEQSIPISEPSLLTQQEER
REECKEEEDDDFDSLMAATPAVEAGSSPFGVGEDTAFSSRHPVRTQSTPFTGPFISVVLSKLENMLENSL
HVNLLLIGIITQLASYPQPLLRSFLLNTNMVFQPSVRSLYQVLASVKNKIEQFASVERDFPGLLIQAQQY
LLFRVDMSDMAPAALTKDPIQEISRPESDKTLLDGPPRVLQPFLGNRAKVTRAPPNLPLPVKNTMLAAAL
FPEFLKELAALAQEHSILCYKILGDFEDSCC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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