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Report for CCDS17434.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17434.1 Public Mus musculus 3 Sfrp2 23 108 98 CCDS HistoryNCBI Gene:20319Re-query CCDS DB by CCDS ID:17434.1Re-query CCDS DB by GeneID:20319See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17434.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029625.7 ENSMUSP00000029625.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029625.7Link to Ensembl Protein Viewer:ENSMUSP00000029625.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000029625Re-query CCDS DB by Protein ID:ENSMUSP00000029625
Original member Current member NCBI NM_009144.2 NP_033170.1 Accepted alive Link to Nucleotide Sequence:NM_009144.2Link to Protein Sequence:NP_033170.1Re-query CCDS DB by Nucleotide ID:NM_009144Re-query CCDS DB by Protein ID:NP_033170Link to BLAST:NP_033170.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033170.1 295 P97299 295 100% 0 0

Chromosomal Locations for CCDS 17434.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 83766542 83767043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 83769326 83769406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 83773118 83773422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (888 nt):
ATGCCGCGGGGCCCTGCCTCGCTGCTGCTGCTAGTCCTCGCCTCGCACTGCTGCCTGGGCTCGGCGCGTG
GGCTCTTCCTCTTCGGCCAGCCCGACTTCTCCTACAAGCGCAGCAACTGCAAGCCCATCCCCGCCAACCT
GCAGCTGTGCCACGGCATCGAGTACCAGAACATGCGGCTGCCCAACCTGCTGGGCCACGAGACCATGAAG
GAGGTGCTGGAGCAGGCGGGCGCCTGGATTCCGCTGGTCATGAAGCAGTGCCACCCGGACACCAAGAAGT
TCCTGTGCTCGCTCTTCGCCCCTGTCTGTCTCGACGACCTAGATGAGACCATCCAGCCGTGTCACTCGCT
CTGCGTGCAGGTGAAGGACCGCTGCGCCCCGGTCATGTCCGCCTTCGGCTTCCCCTGGCCAGACATGCTG
GAGTGCGACCGTTTCCCGCAGGACAACGACCTCTGCATCCCCCTCGCTAGTAGCGACCACCTCCTGCCGG
CCACAGAGGAAGCTCCCAAGGTGTGTGAAGCCTGCAAAACCAAGAATGAGGACGACAACGACATCATGGA
AACCCTTTGTAAAAATGACTTCGCACTGAAAATCAAAGTGAAGGAGATAACGTACATCAACAGAGACACC
AAGATCATCCTGGAGACAAAGAGCAAGACCATTTACAAGCTGAACGGCGTGTCCGAAAGGGACCTGAAGA
AATCCGTGCTGTGGCTCAAAGACAGCCTGCAGTGCACCTGTGAGGAGATGAACGACATCAACGCTCCGTA
TCTGGTCATGGGACAGAAGCAGGGCGGCGAGCTGGTGATCACCTCCGTGAAACGGTGGCAGAAGGGCCAG
AGAGAGTTCAAGCGCATCTCCCGCAGCATCCGCAAGCTGCAATGCTAG

Translation (295 aa):
MPRGPASLLLLVLASHCCLGSARGLFLFGQPDFSYKRSNCKPIPANLQLCHGIEYQNMRLPNLLGHETMK
EVLEQAGAWIPLVMKQCHPDTKKFLCSLFAPVCLDDLDETIQPCHSLCVQVKDRCAPVMSAFGFPWPDML
ECDRFPQDNDLCIPLASSDHLLPATEEAPKVCEACKTKNEDDNDIMETLCKNDFALKIKVKEITYINRDT
KIILETKSKTIYKLNGVSERDLKKSVLWLKDSLQCTCEEMNDINAPYLVMGQKQGGELVITSVKRWQKGQ
REFKRISRSIRKLQC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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