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Report for CCDS17343.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17343.1 Public Mus musculus 3 Foxo1 23 108 98 CCDS HistoryNCBI Gene:56458Re-query CCDS DB by CCDS ID:17343.1Re-query CCDS DB by GeneID:56458See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17343.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053764.6 ENSMUSP00000055308.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053764.6Link to Ensembl Protein Viewer:ENSMUSP00000055308.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000053764Re-query CCDS DB by Protein ID:ENSMUSP00000055308
Original member Current member NCBI NM_019739.3 NP_062713.2 Accepted alive Link to Nucleotide Sequence:NM_019739.3Link to Protein Sequence:NP_062713.2Re-query CCDS DB by Nucleotide ID:NM_019739Re-query CCDS DB by Protein ID:NP_062713Link to BLAST:NP_062713.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062713.2 652 Q9R1E0 652 100% 0 0

Chromosomal Locations for CCDS 17343.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 52268802 52269422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52345039 52346376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1959 nt):
ATGGCCGAAGCGCCCCAGGTGGTGGAGACCGACCCGGACTTCGAGCCGCTGCCCCGGCAGCGCTCCTGTA
CCTGGCCGCTGCCCAGGCCGGAGTTTAACCAGTCCAACTCGACCACCTCCAGTCCGGCGCCGTCGGGCGG
CGCGGCCGCCAACCCCGACGCCGCGGCGAGCCTGGCCTCGGCGTCCGCTGTCAGCACCGACTTTATGAGC
AACCTGAGCCTGCTGGAGGAGAGTGAGGACTTCGCGCGGGCGCCAGGCTGCGTGGCCGTGGCGGCGGCGG
CTGCGGCCAGCAGGGGCCTGTGCGGGGACTTCCAGGGCCCCGAGGCGGGCTGCGTGCACCCAGCGCCGCC
ACAGCCCCCACCGACCGGGCCGCTGTCGCAGCCCCCACCCGTGCCTCCCTCCGCTGCCGCCGCCGCGGGG
CCACTCGCGGGACAGCCGCGCAAGACCAGCTCGTCGCGCCGCAACGCGTGGGGCAACCTGTCGTACGCCG
ACCTCATCACCAAGGCCATCGAGAGCTCAGCCGAGAAGAGGCTCACCCTGTCGCAGATCTACGAGTGGAT
GGTGAAGAGCGTGCCCTACTTCAAGGATAAGGGCGACAGCAACAGCTCGGCGGGCTGGAAGAATTCAATT
CGCCACAATCTGTCCCTTCACAGCAAGTTTATTCGAGTGCAGAATGAAGGAACTGGAAAGAGTTCTTGGT
GGATGCTCAATCCAGAGGGAGGCAAGAGCGGAAAATCACCCCGGAGAAGAGCTGCGTCCATGGACAACAA
CAGTAAATTTGCTAAGAGCCGAGGGCGGGCTGCTAAGAAAAAAGCATCTCTCCAGTCTGGGCAAGAGGGT
CCTGGAGACAGCCCTGGGTCTCAGTTTTCTAAGTGGCCTGCGAGTCCTGGGTCCCACAGCAACGATGACT
TTGATAACTGGAGTACATTTCGTCCTCGAACCAGCTCAAATGCTAGTACCATCAGTGGGAGACTTTCTCC
CATCATGACAGAGCAGGATGACCTGGGAGATGGGGACGTGCATTCCCTGGTGTATCCACCCTCTGCTGCC
AAGATGGCGTCTACGCTGCCCAGTCTGTCTGAAATCAGCAATCCAGAAAACATGGAGAACCTTCTGGATA
ATCTCAACCTTCTCTCGTCCCCAACATCTTTAACTGTGTCCACCCAGTCCTCGCCTGGCAGCATGATGCA
GCAGACACCATGCTATTCGTTTGCACCGCCAAACACCAGTCTAAATTCACCCAGTCCAAACTACTCAAAG
TACACATACGGCCAATCCAGCATGAGCCCTTTGCCCCAGATGCCTATGCAGACACTTCAGGACAGCAAAT
CAAGTTACGGAGGATTGAACCAGTATAACTGTGCCCCAGGACTCTTGAAAGAGTTGTTGACTTCTGACTC
TCCTCCCCACAATGACATTATGTCACCGGTTGATCCCGGAGTGGCCCAACCCAACAGTCGGGTCCTGGGC
CAAAATGTAATGATGGGCCCTAATTCGGTCATGCCAGCGTATGGCAGCCAGGCATCTCATAACAAAATGA
TGAACCCCAGCTCCCACACCCACCCTGGACATGCACAGCAAACGGCTTCGGTCAACGGCCGTACCCTGCC
CCATGTGGTGAACACCATGCCTCACACATCTGCCATGAACCGCTTGACCCCCGTGAAGACACCTTTACAA
GTGCCTCTGTCCCACCCCATGCAGATGAGTGCCCTGGGCAGCTACTCCTCGGTGAGCAGCTGCAATGGCT
ATGGTAGGATGGGTGTCCTCCACCAGGAGAAGCTCCCAAGTGACTTGGATGGCATGTTTATTGAGCGCTT
GGACTGTGACATGGAGTCCATCATTCGGAATGACCTCATGGATGGAGATACCTTGGATTTTAACTTTGAT
AATGTGTTGCCCAACCAAAGCTTCCCACACAGTGTCAAGACTACAACACACAGCTGGGTGTCAGGCTAA

Translation (652 aa):
MAEAPQVVETDPDFEPLPRQRSCTWPLPRPEFNQSNSTTSSPAPSGGAAANPDAAASLASASAVSTDFMS
NLSLLEESEDFARAPGCVAVAAAAAASRGLCGDFQGPEAGCVHPAPPQPPPTGPLSQPPPVPPSAAAAAG
PLAGQPRKTSSSRRNAWGNLSYADLITKAIESSAEKRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWKNSI
RHNLSLHSKFIRVQNEGTGKSSWWMLNPEGGKSGKSPRRRAASMDNNSKFAKSRGRAAKKKASLQSGQEG
PGDSPGSQFSKWPASPGSHSNDDFDNWSTFRPRTSSNASTISGRLSPIMTEQDDLGDGDVHSLVYPPSAA
KMASTLPSLSEISNPENMENLLDNLNLLSSPTSLTVSTQSSPGSMMQQTPCYSFAPPNTSLNSPSPNYSK
YTYGQSSMSPLPQMPMQTLQDSKSSYGGLNQYNCAPGLLKELLTSDSPPHNDIMSPVDPGVAQPNSRVLG
QNVMMGPNSVMPAYGSQASHNKMMNPSSHTHPGHAQQTASVNGRTLPHVVNTMPHTSAMNRLTPVKTPLQ
VPLSHPMQMSALGSYSSVSSCNGYGRMGVLHQEKLPSDLDGMFIERLDCDMESIIRNDLMDGDTLDFNFD
NVLPNQSFPHSVKTTTHSWVSG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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