NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS17303.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17303.1 Public Mus musculus 3 Ttc14 23 108 98 CCDS HistoryNCBI Gene:67120Re-query CCDS DB by CCDS ID:17303.1Re-query CCDS DB by GeneID:67120See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17303.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099153.9 ENSMUSP00000096757.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099153.9Link to Ensembl Protein Viewer:ENSMUSP00000096757.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000099153Re-query CCDS DB by Protein ID:ENSMUSP00000096757
Original member NCBI NM_025978.4 NP_080254.2 Updated not alive Link to Nucleotide Sequence:NM_025978.4Link to Protein Sequence:NP_080254.2Re-query CCDS DB by Nucleotide ID:NM_025978Re-query CCDS DB by Protein ID:NP_080254
Current member NCBI NM_025978.5 NP_080254.2 Accepted alive Link to Nucleotide Sequence:NM_025978.5Link to Protein Sequence:NP_080254.2Re-query CCDS DB by Nucleotide ID:NM_025978Re-query CCDS DB by Protein ID:NP_080254Link to BLAST:NP_080254.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080254.2 438 Q9CSP9-2 438 99.7717% 0 1

Chromosomal Locations for CCDS 17303.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 33800279 33800436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33800956 33801080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33801191 33801390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33802859 33802943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33803075 33803204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33803450 33803605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33804000 33804071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33804421 33804540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33804640 33804762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33806816 33806963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1317 nt):
ATGGACCGCGACTTGCTGCGGCAGTCGCTGGGCTGCCACGGCCCGGCCCTGCTGTCGCTGCTGCGGAGTG
AACAGCAGGACAACCCGCACTTCCGGAGCCTGCTGGGCACGGCGGCCGAGCCAGCCCGCGGCGCGGCGCC
TCCTCCGGGAGCCGGCAGGAAAGAGAAGAGAGTTGACAACATTGAAATACAAAAATTCATCTCTAAAAAA
GCGGATCTGCTTTTTGCACTGTCTTGGAAATCAGACGCATCTCCACCCTCTGAAGTGCATGACGACAATG
ACAATCTTTATGCGGTCATGCCACCCTTAGAGCAGTTCATGGAGATGCCAAGCATGGACCGGAGAGAGCT
CTTCTTCCGAGATATTGAACGTGGTGATATAGTGATTGGAAGAATTAGCTCTATTCGGGAGTTTGGTTTT
TTCATGGTGTTGATCTGTTTAGGAAGTGGCATCGTGAGAGATATTTCGCACTTAGAAATCACAGCTCTTT
GTCCCTTAAGAGATGTGCCTTCTCACAGTAACCATGGAGATCCTTTATCATATTATCAAACTGGTGACAT
AATTCGAGCTGGAATCAAGGATATTGACAGATACCATGAAAAGCTTGCAGTATCTCTGTATAGCTCATCT
CTTCCTCCACACATGGCTGGCATTAAACTAGGTGTGATCACTTCTGAAGAGCTTCCTTTGTACTACAGGA
GGAGTGTTGAACTAAATAGTAATTCTTTGGAGTCCTATGAAAATATCATGCAGAGTTCTCTGGGATTTGT
TAATCCAGGAGTAGTTGAATTCCTTCTAGAGAAACTAGGAATAGATGAATCTCATCCACCGTCTTTAATG
AGAGGCCTACAAAGCAAAAATTTCTCTGAAGATGATTTTGCTTCAGCATTAAGAAAGAAGCAGTCAGCAT
CTTGGGCTTTAAAATGTGTGAAGATTGGAGTCGATTATTTTAAGGTGGGGCGACATGTGGATGCTATGAA
CGAATACAATAAAGCTCTGGAAATAGACAAACAAAATGTGGAGGCTTTGGTAGCGCGAGGAGCATTATAT
GCAACAAAAGGAAGTCTAAACAAAGCAATAGAAGATTTTGAGCTCGCATTAGAAAACTGCCCAACTCATA
GGAATGCAAGGAAATATCTCTGCCAGACACTTGTAGAAAGGGGAGGGCAGTTAGAAGAAGAAGAAAAGTT
TCTAAATGCTGAAAGTTACTATAAGAAAGCTCTGACTTTGGATGAGACTTTTAAAGATGCAGAGGATGCT
TTGCAGAAACTTCATAAATATATGCAGGTGATTCTTTATTTCCTCTTTGAAATTTGA

Translation (438 aa):
MDRDLLRQSLGCHGPALLSLLRSEQQDNPHFRSLLGTAAEPARGAAPPPGAGRKEKRVDNIEIQKFISKK
ADLLFALSWKSDASPPSEVHDDNDNLYAVMPPLEQFMEMPSMDRRELFFRDIERGDIVIGRISSIREFGF
FMVLICLGSGIVRDISHLEITALCPLRDVPSHSNHGDPLSYYQTGDIIRAGIKDIDRYHEKLAVSLYSSS
LPPHMAGIKLGVITSEELPLYYRRSVELNSNSLESYENIMQSSLGFVNPGVVEFLLEKLGIDESHPPSLM
RGLQSKNFSEDDFASALRKKQSASWALKCVKIGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALY
ATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERGGQLEEEEKFLNAESYYKKALTLDETFKDAEDA
LQKLHKYMQVILYFLFEI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH