CCDS Report for Consensus CDS

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Report for CCDS17260.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
17260.1	Public	Mus musculus	3	Hps3	23	108	98

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17260.1

Original	Current	Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status	Links
		EBI	ENSMUST00000012580.12	ENSMUSP00000012580.6	Accepted	alive
		NCBI	NM_080634.4	NP_542365.3	Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_542365.3	1002	Q91VB4	1002	100%	0	0

Chromosomal Locations for CCDS 17260.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)

Genome Browser links:

Chromosome	Start	Stop
3	19996902	19997029
3	20002323	20002413
3	20003225	20003431
3	20008815	20008922
3	20010800	20010988
3	20011389	20011574
3	20012697	20012930
3	20014023	20014203
3	20015826	20016007
3	20018811	20018919
3	20019803	20019957
3	20022758	20022839
3	20025731	20025920
3	20028960	20029045
3	20029147	20029318
3	20030314	20030805
3	20035049	20035265

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3009 nt):
ATGGTGCGTCTGTACAACCTGCACCCGTTTGGGTCGCAGCAGGTAGTCCCCTGCCAGTGGGAGCCGGAGC AGGTCTGCTGCGGCGGGAGCGACGCGCTGTTCGTGGCTGCCGGCTGCAAGGTGGAGGCGTTCGCTGTTCA GGGCGAAGAGCTGTGCCGGCAGCGCTGCGCCTTCTCCACGCTAGGCAGGGTGCTGCGCATGGCCTACAGC GAAGCCGGAGACTATCTGGTAGCAATTGAGGAGAAAAACAAAACTATATTCCTGCGTGCTTACGTGAATT GGAGGAGTAAGAGGAGCGACAACTCCCGTGTGTGCATTCGAATGGTTGGCCACAATGTGGAGGCATCCTT CTGTGAAAGCTTTAGAGACCAGATGTCTATAATTGAGATGCCAATGTCTGAGGCCCCTTTGTGCTTTTCG TGTTGTCCTGTGAAAGGAGATCTTCTTGTTGGATGTACAAATAAGTTAGTGTTATTTACTTTGAAGTATG ATATCATTAATGAGGAATTCTCAATATTGAACTTTGAACGTTCATTAATTATACACATAGATAATATCAC TCCTGTTGAAATCTCTTTTTGTGTTGGATATGTTGCTGTCATGTCTGATTTAGAAGTCTTACTCCTAAAA CTGGAGTCAGACCCTATACATGGAGAGAGTGTTGACCACCACCCACAAGAAACCAGCAATCCATTGAAAG AGGCGGAAGGTGTCAGTAATGAAACTTCACAACTTGAGTCAGAAGATTTTGTTATCTGTCTAAAACCCAT GGAACTCATTGGTGAAAAATGTGAACAGTCTGGGATATCTGTTAAACTGGAGTCCACAGGATTAGAAGAT GAAAAAGTAAAATATTTACGTGTTCGGCATCTATTGTATAGACGTTTTGCTCCAGATATTTCGTCCTATG TCTTGTCTGATAACATCAAGTTACATTCCCTTCAGCTGCTACCCATTCACCAAAGTGGTTTTCATCCTGA TGAAAATGATTTATCGCCGAAAAAAGAGATGCCAAATCTCTTCTGTTTCTTCTCGTTACCTCATGTGGGC TATCTGTACATGGTTGTGAAGTCTGTTGAATTAATGTCAGTCTATTGGTATCCTGAGAAGTCTCAACAAG CCGTGCTCACACCACAGTTCTTGCATGTCATCACAAGCCAAAGCCTGCAGTGTTTCACGGTGCGATGCAG TGCAGCGGTGGCACATGAGGAAGACCTATACATGGATACTACGCTAAAGGCTTGCCCACCTGTCAGTATG GACGTTTGTGCTCTAAGGATACAGCTTTTCATAGGCTTGAAAGCCATCTGTCACTTTAAAAACCACATTA TACTTCTGACGAAGGCAGAGCCTGAGGCCATTCCAGAGAGAAGAGAGTCACCCAAGAAACTTATTTCTAG AAAAGATGCCAGTGTTAGGAGCGGAACCCCTCACGTGGCTGAAGCGGCATGGAATCTGTATCTCGTGAAC ACCACGGCACCAGTGCAGCTGTACAAAGAAATGGTAGACTATAGTAACAGCTACAAGACCGTGAAAACCG AGAGCTGTCTCCACCTGCTCAGTGAGGCTCATCTGCTAGTGAGAGCTGCCCTGATGGATGGCAGTCAGCT GGAGCCTGCAGAGAAAGCAGAACTCCTGGAAGCTTTTAAAGAAAGCTGTGGACACCTTGGAGACTGTTAC AGCAGGCTTACCACTGAGCAATCCCATCTCGCCTTGCCGTACTATAAGATGTCTGGTTTGTCTCTGGCTG AAGTCTTGGCCCGTGTGGACTGGACAGAAGAGAGTGAATCACAGAAATATGAGAGAGGACTAGTATTTTA TATTAATCATTCTCTTTATGAAAACCTGGATGAAGAATTAAGTAAAGAATTAGCAGCAAAAGTGGCTCAG ATATTCCACATGGCTGAGCCGAAGCAGCTGCCTCATGTTCTCTCTAGCCCTTCTATGAAGAATATTGATC CCTTAACTGCCTTGCATTATTTAAGGAAGCTGGATAGTTGTGGAGTTTCACCCGTCTTAGTGACCTTGAC CAAGGCTGCAGTGGCCTTGAAAATGGGAGATCTTGACATGTACAGAAATGAGATGAAAAGCCATTCGGAG ATGAAGCTGGTGTATGGCTTCATTCTGGAACCCCGGCTGTTAATTCAACAGTGGAAAGGACAGATTGTTC CTACAGAACTTGCGATTGACTTGAAGGAAACTCAGCCTGGATTGCTTGTGGCTTCAGTCCTGGGCTTACA GAAGAATGATAAAATTGGAATTGTAGAAACAGATTCTTTCTTTAAGGTGCTGTGTGGAAAGGATGAAGAC GCAGTTCCGCAGCTTTTGATAGACTTCTGGGAAGCTCAGCTCGTAGCTTGTCTCCCAAATGTGGTACTTG AGGAACTCTTTTTCAAGCTCATCTCTCAGTACGTTTGGAGGTTATCTGAGAGGCGGTGTCCTGACACCGT ACCACTGAGAACAGCGGAGGATTTGATAAATGCCTGCAGTCATTATGGCCTAGTAAATCCATGGGTTCAT GTGTTAACGACATCTGATTCCTTAGCTGATAAAAATTACACAGACGACCTTCTGAAATTACAGTCTCTCA TCTGTAGCCCTTCATTGGACGTAGCCTCCATTATTCCGTTTTTGGAGCCACTCTCAGAAGACACTGTTGC CGGCCTCAGTACTCATGCTCTCTGCCATACACGCTTACAAGAGTATGAACAGTGCATAGACACGTTGCTA GAGAGATGCCCAGAGGCCGTCATTGCGTATGCTAATCAGGAACTGAAGGAAGATCACTGGATTCTGTGGT GGAAAAAGCTGCTGCCTGAGCTCTGCCAGAGAGTCAAGAGTGGTGGCGAGAGGTCCCACCTTCACCTGTC ATTGTTAAAAGAAACCTTGTCGGTTATTGCTGTGGGACTGGACCTGAGGGATTTCTTGAATGTTCTCCCA GAAGATGGGGCAGCAGCATTTTTCCTGCCCTACCTCCTTTTCTGCAGCCGGAAGAAATCACTAACTTGA
Translation (1002 aa):
MVRLYNLHPFGSQQVVPCQWEPEQVCCGGSDALFVAAGCKVEAFAVQGEELCRQRCAFSTLGRVLRMAYS EAGDYLVAIEEKNKTIFLRAYVNWRSKRSDNSRVCIRMVGHNVEASFCESFRDQMSIIEMPMSEAPLCFS CCPVKGDLLVGCTNKLVLFTLKYDIINEEFSILNFERSLIIHIDNITPVEISFCVGYVAVMSDLEVLLLK LESDPIHGESVDHHPQETSNPLKEAEGVSNETSQLESEDFVICLKPMELIGEKCEQSGISVKLESTGLED EKVKYLRVRHLLYRRFAPDISSYVLSDNIKLHSLQLLPIHQSGFHPDENDLSPKKEMPNLFCFFSLPHVG YLYMVVKSVELMSVYWYPEKSQQAVLTPQFLHVITSQSLQCFTVRCSAAVAHEEDLYMDTTLKACPPVSM DVCALRIQLFIGLKAICHFKNHIILLTKAEPEAIPERRESPKKLISRKDASVRSGTPHVAEAAWNLYLVN TTAPVQLYKEMVDYSNSYKTVKTESCLHLLSEAHLLVRAALMDGSQLEPAEKAELLEAFKESCGHLGDCY SRLTTEQSHLALPYYKMSGLSLAEVLARVDWTEESESQKYERGLVFYINHSLYENLDEELSKELAAKVAQ IFHMAEPKQLPHVLSSPSMKNIDPLTALHYLRKLDSCGVSPVLVTLTKAAVALKMGDLDMYRNEMKSHSE MKLVYGFILEPRLLIQQWKGQIVPTELAIDLKETQPGLLVASVLGLQKNDKIGIVETDSFFKVLCGKDED AVPQLLIDFWEAQLVACLPNVVLEELFFKLISQYVWRLSERRCPDTVPLRTAEDLINACSHYGLVNPWVH VLTTSDSLADKNYTDDLLKLQSLICSPSLDVASIIPFLEPLSEDTVAGLSTHALCHTRLQEYEQCIDTLL ERCPEAVIAYANQELKEDHWILWWKKLLPELCQRVKSGGERSHLHLSLLKETLSVIAVGLDLRDFLNVLP EDGAAAFFLPYLLFCSRKKSLT

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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